| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,561,446 – 6,561,560 |
| Length | 114 |
| Max. P | 0.838540 |
| Location | 6,561,446 – 6,561,560 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.94 |
| Mean single sequence MFE | -33.18 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6561446 114 - 22407834 -----CCGAAGA-GGACAUCCCCAGAAUCCAAUUGGGCGACUACAUCGUCAUCCAGCGGCAGAAAUAUACGAAGCUACAAAAAUUCGGCAGUCUGGACACCACGGCCACAUUGGGCAAAG -----.....(.-((....)).)....(((((((((.((((......))).((((((.(((....)...((((..........)))))).).)))))......).))).))))))..... ( -25.20) >DroPse_CAF1 35368 114 - 1 -----CCGAUGG-GACUACACCCAACAUUCAGCUGGGCGACUACAUAGUCAUACAGCGCCAAAAGUACACAAAGCUGCAGAAAUUCGGCAGCUUAGACACGACGUCCACAUUGGGCAAGG -----(((((((-(((...............((((...((((....))))...))))..............(((((((.(.....).))))))).........)))).))))))...... ( -35.60) >DroGri_CAF1 43358 120 - 1 UUGCCGCAAUGGGUAGCAUACCGAACAUACAGUUGGGUGACUAUAUUGUCAUUCAGCGCCAAAAGUAUACCAAAUUGCAAAAAUUCGGCAGCUUAGAUGCCACUGCGACGUUGGGCAAAG (((((.(((((.((((......(((......((((((((((......)))))))))).......(((........))).....)))((((.......)))).))))..)))))))))).. ( -38.10) >DroWil_CAF1 53832 114 - 1 -----CUGCAUU-AACGACGCCUAAUAUUCAAUUGGGAGACUACAUAGUCAUCCAGCGGCAAAAGUAUACAAAACUACAGAAAUUCGGUAGUCUGGAUACCACAGCAACAUUGGGCAAGG -----.......-......(((((((.......(((..((((....))))..)))(..((....((((.((..(((((.(.....).))))).)).))))....))..)))))))).... ( -27.10) >DroAna_CAF1 35901 102 - 1 -----CC-------------CCCAGCAUCCAGCUGGGCGACUACAUAGUCAUCCAGCGUCAGAAGUACACGAAACUGCAAAAGUUCGGCAGCCUGGACACCACGGCCACGCUGGGAAAGG -----..-------------((((((.....(((((..((((....))))..))))).......((...((((.((.....))))))...((((((...))).))).))))))))..... ( -37.50) >DroPer_CAF1 35339 114 - 1 -----CCGAUGG-GACUACACCCAACAUUCAGCUGGGCGACUACAUAGUCAUACAGCGCCAAAAGUACACAAAGCUGCAGAAAUUCGGCAGCUUAGACACGACGUCCACAUUGGGCAAGG -----(((((((-(((...............((((...((((....))))...))))..............(((((((.(.....).))))))).........)))).))))))...... ( -35.60) >consensus _____CCGAUGG_GACCACACCCAACAUUCAGCUGGGCGACUACAUAGUCAUCCAGCGCCAAAAGUACACAAAACUGCAAAAAUUCGGCAGCCUAGACACCACGGCCACAUUGGGCAAGG ....................(((((......((((((.(((......))).))))))................(((((.........)))))..................)))))..... (-17.62 = -17.60 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:17 2006