Locus 2404

Sequence ID 2L_DroMel_CAF1
Location 6,553,188 – 6,553,280
Length 92
Max. P 0.666187
window3871

overview

Window 1

Location 6,553,188 – 6,553,280
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.52
Mean single sequence MFE -20.40
Consensus MFE -11.82
Energy contribution -11.68
Covariance contribution -0.14
Combinations/Pair 1.25
Mean z-score -1.64
Structure conservation index 0.58
SVM decision value 0.28
SVM RNA-class probability 0.666187
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6553188 92 - 22407834
UG-UGGCAUUGUUAUUAAUCUAUCAUUAGGUCGCCGUUGUACAACAGGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUCACACAUUCUGCCC-----
((-(((..(((((........(((((((((..((((((....))).))))))))))))((((....))))..))))).)))))..........----- ( -23.10)
>DroVir_CAF1 115370 88 - 1
UAUCGUUAUUGUUAUUAAUUUGUCAUAAGGCCG-CGUUGUACAACAGGCUCUAAUGAUGCAUGUAAAUGCAAAACAAAUCACAUGCCCA---------
........(((((........(((((.(((((.-.(((....))).))).)).)))))((((....))))..)))))............--------- ( -18.80)
>DroPse_CAF1 27349 97 - 1
UC-UGGCAUUGUUAUUAAUUCAUCAUUAAGUCGGUGUUGUACAACAAGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUGACAAGUCUGGCCCUCCAC
..-.(((.((((((((.....((((((((((...((((....)))).))).)))))))((((....))))......)))))))).....)))...... ( -22.50)
>DroGri_CAF1 33607 96 - 1
CUUUGUCAUUGUUAUUAAUUUGUCAUAAGGCCG-CGUUUUACAACAGGCUCUAAUGAUGCAUGUAAAUGCAAAACAAAUGGCAACUCAACCCAAGC-C
..(((((((((((........(((((.(((((.-.(((....))).))).)).)))))((((....))))..))).))))))))............-. ( -23.70)
>DroAna_CAF1 27366 81 - 1
UC-UGGCAUUGUUAUUAAUUUAUCAUUAAGUCGCCGUUGUACAACAAGCUCUAAUGAUCCGUGUAAAUGCUAAAUAAAUAAC----------------
..-(((((((.......((..((((((((((....(((....)))..))).)))))))..))...)))))))..........---------------- ( -11.80)
>DroPer_CAF1 27332 97 - 1
UC-UGGCAUUGUUAUUAAUUCAUCAUUAAGUCGGUGUUGUACAACAAGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUGACAAGUCUGGCCCUCCAC
..-.(((.((((((((.....((((((((((...((((....)))).))).)))))))((((....))))......)))))))).....)))...... ( -22.50)
>consensus
UC_UGGCAUUGUUAUUAAUUUAUCAUUAAGUCG_CGUUGUACAACAAGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUGACAAGUCCAGCCC_____
.........(((((((.....((((((((((....(((....)))..))).)))))))((((....))))......)))))))............... (-11.82 = -11.68 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:15 2006