Locus 24

Sequence ID 2L_DroMel_CAF1
Location 86,688 – 86,779
Length 91
Max. P 0.654373
window36

overview

Window 6

Location 86,688 – 86,779
Length 91
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 78.91
Mean single sequence MFE -28.62
Consensus MFE -22.90
Energy contribution -22.46
Covariance contribution -0.44
Combinations/Pair 1.25
Mean z-score -1.34
Structure conservation index 0.80
SVM decision value 0.25
SVM RNA-class probability 0.654373
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 86688 91 - 22407834
GGCUAUGGCCCAAGGCUAUGCAAUAGA-----------------CACUGAAGAUAAUUGACGACCAACAUUGUUAAUAGGGGGUGCUGCCGUGUGCACCCAGAAAGCC
((((((((((...))))))........-----------------...........((((((((......))))))))...((((((........))))))....)))) ( -26.70)
>DroSec_CAF1 59155 91 - 1
GGCUAUGGGCCAAGUCUAUGCAAUAGA-----------------CACUGAAGAUAAUUGACGGCCAAAAUUGUUAAUUGGGGGUGCUGCCGUGUGCACCCAGAAAGCC
((((...((((..((((((...)))))-----------------).(....).........))))...............((((((........))))))....)))) ( -28.70)
>DroSim_CAF1 61649 91 - 1
GGCUAUGGGCCAAGGCUAUGCAAUAGA-----------------CACUGAAGAUAAUUGACGGCCAAAAUUGUUAAUUGGGGGUGCUGCCGUGUGCACCCAGAAAGCC
(((.....)))..((((..........-----------------.........((((((((((......)))))))))).((((((........))))))....)))) ( -27.50)
>DroEre_CAF1 66218 108 - 1
GGCUAUGGCCUAGGACCAUGCCAUAGACAACUUAGCAUAGGAUACACUGAAGGUUAUUGGCGAAUAAUAUUGUUAAUAGGGGGUGCUGCGGUGUGCACCCAGAAAACU
(((.(((((....).)))))))...............(((......)))....((((((((((......)))))))))).((((((........))))))........ ( -29.20)
>DroYak_CAF1 59298 107 - 1
GGCUUUGGCCCAUGGCCAUACCAUAAAACACUUACCAUAUGAUACACUGAAGAUUAUUGACGACCAAAAUUGUUAGUAGG-GGUGCUGCGGUGUGCACCCAGAAAGCC
((((((((((...))))....................................((((((((((......))))))))))(-(((((........))))))..)))))) ( -31.00)
>consensus
GGCUAUGGCCCAAGGCUAUGCAAUAGA_________________CACUGAAGAUAAUUGACGACCAAAAUUGUUAAUAGGGGGUGCUGCCGUGUGCACCCAGAAAGCC
((((((((((...))))))...........................(((....((((((((((......))))))))))..(((((........))))))))..)))) (-22.90 = -22.46 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:30 2006