Locus 2398

Sequence ID 2L_DroMel_CAF1
Location 6,527,734 – 6,527,825
Length 91
Max. P 0.995264
window3859

overview

Window 9

Location 6,527,734 – 6,527,825
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 89.79
Mean single sequence MFE -16.92
Consensus MFE -16.64
Energy contribution -16.84
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.98
SVM decision value 2.56
SVM RNA-class probability 0.995264
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6527734 91 + 22407834
GUUAAUUUAUUUACUUGUUAAUUAUACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA
.....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. ( -17.60)
>DroSec_CAF1 14772 91 + 1
AUUAAUUUAUUUACUUGUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA
.....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. ( -17.40)
>DroSim_CAF1 14641 91 + 1
AUUAAUUUAUUUACUUGUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA
.....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. ( -17.40)
>DroEre_CAF1 12429 79 + 1
AU----UU--------AUAAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUGGAUUAGGUGUUUAAAAACUAUAUAAUA
..----..--------.....(((.((((((((.((...((((((((...))).)))))...))..)))))))).)))............. ( -14.50)
>DroYak_CAF1 14155 82 + 1
AA----UUA-----UUAUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA
.(----(((-----(......(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).))).......))))). ( -17.72)
>consensus
AUUAAUUUAUUUACUUGUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA
.....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. (-16.64 = -16.84 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:03 2006