Locus 2397

Sequence ID 2L_DroMel_CAF1
Location 6,525,242 – 6,525,345
Length 103
Max. P 0.593453
window3858

overview

Window 8

Location 6,525,242 – 6,525,345
Length 103
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 75.91
Mean single sequence MFE -23.87
Consensus MFE -13.32
Energy contribution -14.24
Covariance contribution 0.92
Combinations/Pair 1.27
Mean z-score -1.57
Structure conservation index 0.56
SVM decision value 0.12
SVM RNA-class probability 0.593453
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6525242 103 - 22407834
GUUAGAAUACUCAAAACGAGAUUAUCAUGUG-----UCUAUAUA----CAUGU-CUAUAUAUAUGAUGAAUGAUAUAUGUAAUUGCUGGCGUAAUAGUUGAGCGCCGAGCCGU
...............(((.(((((.((((((-----((..(((.----(((((-......))))))))...)))))))))))))((((((((.........))))).)))))) ( -24.00)
>DroPse_CAF1 18835 93 - 1
GAUAGAAUCA----------GUAAUCAUAUGGUA-GGGAGUAUA----CAU---AUAUCUGUUUGCCGGGCGAU--GUAUAAUUGCUGGCGUAAUAGUUGUGCAUGGAGCCGU
..........----------.........(((((-((.(((((.----...---))).)).)))))))(((.((--(((((((((.........)))))))))))...))).. ( -20.90)
>DroSec_CAF1 12335 110 - 1
GUUAGAAUACUCAAACCGAGAUUAUCAUAUGAAU-GUCUAUAUAUGUACAUAUAAUAUAUAUGUGAUGAAUGAU--AUGUAAUUGCUGGCGUAAUAGUUGAGCGCCGAGCCGU
.........(((.....))).((((((((((.((-((.(((((......))))))))).)))))))))).....--........((((((((.........))))).)))... ( -23.90)
>DroSim_CAF1 12223 110 - 1
GUUAGAAUACUCAAACCGAGAUUAUCAUAUGUAU-GUCUAUAUAUGUACAUAUAAUAUAUAUGUGAUGAAUGAU--AUGUAAUUGCUGGCGUAAUAGUUGAGCGCCGAGCCGU
.........(((.....))).(((((((((((((-((.(((((......)))))))))))))))))))).....--........((((((((.........))))).)))... ( -28.30)
>DroEre_CAF1 9773 91 - 1
GUUAGAAUACUCGAAUAGAGAUUAUCAUAUGUC---------U-----------AUAUAUAUGUGACGAAUGAU--AUAUAAUUGCUGGCGUAAUAGUUGAGCGCCGAGCCGU
.........(((.....)))..((((((.((((---------.-----------..........)))).)))))--).......((((((((.........))))).)))... ( -21.00)
>DroYak_CAF1 11479 100 - 1
GUUAGAAUACUCAAAUAGAGAUUAUCAUAUGUAUAGUAUAUAU-----------AUGUAUAUGUGAUGAGUGAU--AUAUAAUUGCUGGCGUAAUAGUUGAGCGCCGAGCCGU
.........(((.....))).((((((((((((((........-----------.)))))))))))))).....--........((((((((.........))))).)))... ( -25.10)
>consensus
GUUAGAAUACUCAAACCGAGAUUAUCAUAUGUAU_GUCUAUAUA____CAU___AUAUAUAUGUGAUGAAUGAU__AUAUAAUUGCUGGCGUAAUAGUUGAGCGCCGAGCCGU
.........(((.....))).(((((((((((..........................)))))))))))...............((((((((.........))))).)))... (-13.32 = -14.24 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:02 2006