| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,521,780 – 6,521,872 |
| Length | 92 |
| Max. P | 0.942143 |
| Location | 6,521,780 – 6,521,872 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 61.73 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -10.15 |
| Energy contribution | -9.17 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.942143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6521780 92 - 22407834 AAGGCCUGUAAAUAUAUGCCUCCGUUUGUA-UGUGUGCUCGC-UUGUGUGAGUGUUUAUUUUU----AAAAAUAUGCAUAAUUGUCGCGUGCGGGUUA ..(((((((......((((..(.(((((((-(((..((((((-....)))))).((((....)----))).))))))).))).)..))))))))))). ( -23.80) >DroMoj_CAF1 57417 81 - 1 CAGGCUCGC-------UUGUUAUGC-----GCGUGUGUGUGCGUGUU-----GGUUUAUUUAUACUUAUAAAUAUGCAUAAUUGUCGCGUGCGGGCUA ..(((((((-------.......((-----(((....((((((((((-----(((........)))....)))))))))).....)))))))))))). ( -28.11) >DroAna_CAF1 48787 75 - 1 AAAGCUUGU-------UGGCCGUGAGUGUA-UGUGUGGAC-----------UUGUUUAUUUAU----AAAAAUAUGCAUAAUUGUCGCGUGCGGGUUA ..(((((((-------....(((((...((-((((((...-----------((((......))----))...))))))))....))))).))))))). ( -18.00) >consensus AAGGCUUGU_______UGGCUAUGA_UGUA_UGUGUGCACGC_U__U_____UGUUUAUUUAU____AAAAAUAUGCAUAAUUGUCGCGUGCGGGUUA ..(((((((................................................((((((....))))))((((.........))))))))))). (-10.15 = -9.17 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:59 2006