Locus 2390

Sequence ID 2L_DroMel_CAF1
Location 6,499,503 – 6,499,622
Length 119
Max. P 0.765307
window3850

overview

Window 0

Location 6,499,503 – 6,499,622
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.48
Mean single sequence MFE -36.02
Consensus MFE -23.03
Energy contribution -21.45
Covariance contribution -1.58
Combinations/Pair 1.50
Mean z-score -1.52
Structure conservation index 0.64
SVM decision value 0.51
SVM RNA-class probability 0.765307
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6499503 119 - 22407834
GAUCAUGUCGGCGUAGUCGCAGUUGAGCAGGUUCUUCAGGUUCUGCACGGCCAGCUCCUGAUCGUCAGGAUCGCGGAUCUGCUUGAUGCCGAAGUCGAGCAGCGGCUCAUAGUGAUAGA
.(((((.(((((((....)).((..(((((((((....(((((((.(((..(((...)))..))))))))))..)))))))))..)))))))....((((....))))...)))))... ( -49.00)
>DroVir_CAF1 22365 119 - 1
GGACAUAUCACCAUAAUCACAAUUGAGCAGAUUCUUUAGAUUUUGCACGGCCAACUGUUGAUCCUCGGGAUCACGCACCUGCUUAAUGCCAAAAUCCAACAGCGGCUCAUAGUGAUAAU
((........))...(((((.(((((((((..((....))...(((((((....))))((((((...)))))).))).)))))))))(((.............))).....)))))... ( -28.82)
>DroGri_CAF1 26402 119 - 1
GGUCAUGUCACCGUAAUCACAAUUGAGCAGAUUCUUCAGAUUUUGUACGGCCAACUGCUGAUCGUCCGGAUCACGCACCUGCUUGAUGCCAAAGUCCAGCAACGGUUCAUAGUGAUAAU
(((......)))...(((((...((((((((.((....)).)))))...(((...((((((((.....))))).)))..((((.(((......))).))))..))))))..)))))... ( -29.80)
>DroWil_CAF1 27310 119 - 1
CUGCAUAUCUGAAUAGUCGCACUGGAGCAAAUUUUUUAGAUUUUGCACGGCCAAAAUUUGGUCAUCGGGAUCCCGUAUCUGCUUAAUGCCAAAAUCUAAGAGUGGUUCGUAGUGAUAGA
................((.(((((((((....(((((((((((((((.(((((.....)))))..(((....)))...........)).)))))))))))))..)))).)))))...)) ( -33.20)
>DroMoj_CAF1 22878 119 - 1
GGACAUAUCGGCGUAAUCACAAUUGAGCAAAUUCUUAAGAUUUUGUACAGCGAAUUGUUGUUCCUCAGGCUCGCGCACUUGUUUAAUGCCAAAAUCUAACAGUGGCUCAUAGUGAUAGU
...............(((((...(((((.....((..((((((((....((((.(((........)))..))))(((.........)))))))))))...))..)))))..)))))... ( -26.10)
>DroAna_CAF1 23071 119 - 1
CAUCAUAUCGGCGUAGUCGCAAUUGAGCAGGUUCUUCAGAUUCUGGACGGCCAGUUCCUGGUCGUCGGGAUCACGGAUUUGCUUGAUCCCGAAGUCGAGCAGCGGCUCGUAAUGAUAGA
.(((((....(((.((((((.((..(((((((((....(((((((.((((((((...)))))))))))))))..)))))))))..))..((....))....))))))))).)))))... ( -49.20)
>consensus
GGUCAUAUCGGCGUAAUCACAAUUGAGCAGAUUCUUCAGAUUUUGCACGGCCAACUGCUGAUCGUCGGGAUCACGCACCUGCUUAAUGCCAAAAUCCAACAGCGGCUCAUAGUGAUAGA
...............(((((...(((((..........(((((((((.(((....((((((((.....))))).)))...)))...)).)))))))........)))))..)))))... (-23.03 = -21.45 +  -1.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:55 2006