Locus 2389

Sequence ID 2L_DroMel_CAF1
Location 6,499,204 – 6,499,303
Length 99
Max. P 0.982338
window3849

overview

Window 9

Location 6,499,204 – 6,499,303
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.03
Mean single sequence MFE -40.23
Consensus MFE -17.86
Energy contribution -18.42
Covariance contribution 0.56
Combinations/Pair 1.28
Mean z-score -2.63
Structure conservation index 0.44
SVM decision value 1.91
SVM RNA-class probability 0.982338
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6499204 99 - 22407834
GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGACUGCUGCUGCUGCUGCAAUUGCUGCUGGAAGCGAUCGUAGAAGGCGCUGCGCGCCAGCGAAUUG
(((((.(((.(.((((((((....)))))))))))).)))))((((.((((.((((((......)))))).))))..(((((...)))))))))..... ( -43.70)
>DroPse_CAF1 28208 93 - 1
GUAGCUGUCAGGUUGUAGACGACAGUCUGCGAGGGCUGCU------GCUGCAUCUGCUGCUGCAGGCGUUCGUAGAAGGAGUUGCGGCCUAGGCUGUUG
.(((((...(((((((((.(..(..((((((((.(((((.------((.((....)).)).))).)).)))))))).)..)))))))))).)))))... ( -41.60)
>DroEre_CAF1 21319 96 - 1
GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGGCUGCU---GCUGCUGCAGUUGCUGCUGGAAGCGAUCAUAGAAGGCGCUGCGCGCCAGCGAAUUG
(((((((.(((...((((.((((((((...))))))))))---))..))))))))))((((((.((((.((......)))))).....))))))..... ( -46.40)
>DroWil_CAF1 27023 87 - 1
GUGGCUGUGAGAUUAUAAACAGUCGUCUGAGAGACCGACA------------GCUGCGAUUGAAAUCGUUCAUAGAGACUAUUGCGAUUCAGAGAAUUU
(..(((((..((((......))))(((.....)))..)))------------))..)..(((((.((((..((((...)))).)))))))))....... ( -21.70)
>DroYak_CAF1 21742 96 - 1
GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGGCUGCU---GCUGCUGCAGUUGCUGCUGGAAGCGAUCAUAGAAGGCGCUGCGCGCCAGCGAAUUG
(((((((.(((...((((.((((((((...))))))))))---))..))))))))))((((((.((((.((......)))))).....))))))..... ( -46.40)
>DroPer_CAF1 28541 93 - 1
GUAGCUGUCAGGUUGUAGACGACAGUCUGCGAGGGCUGCU------GCUGCAUCUGCUGCUGCAGGCGUUCGUAGAAGGAGUUGCGGCCUAGGCUGUUG
.(((((...(((((((((.(..(..((((((((.(((((.------((.((....)).)).))).)).)))))))).)..)))))))))).)))))... ( -41.60)
>consensus
GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGGCUGCU______GCUGCAGCUGCUGCUGGAAGCGAUCAUAGAAGGCGCUGCGCGCCAGCGAAUUG
(((((.(((...((((((((....)))))))).))).(((......((.((....)).))....))).............))))).((....))..... (-17.86 = -18.42 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:54 2006