| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,497,768 – 6,497,879 |
| Length | 111 |
| Max. P | 0.526146 |
| Location | 6,497,768 – 6,497,879 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -29.92 |
| Consensus MFE | -21.75 |
| Energy contribution | -21.70 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6497768 111 + 22407834 AAAUUCCACAUUUCUAGCCUAAAUCUGAACAUCAUGCUGCUUGUUCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGUUCGGAUGAGAGGGAUUGC .................(((..(((((((((((((..((.(((((((......((((((..........)))))).))))))))).)))))))))))))...)))...... ( -33.30) >DroSec_CAF1 20059 111 + 1 AAAUUCCACAUAUCUAGCCUUAAUCUGAACAUCCUUUUACUUGUCCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGUUCGGAUGAGAGGGAUUGC .................((((.((((((((((((((.....(((((.((.....))))))).....(((((......)))))..))).)))))))))))..))))...... ( -30.70) >DroSim_CAF1 20925 111 + 1 AAAGUACUCAUCUCUAGCCUAAAUCUGAACAUCCUUUUACUUGUCCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGUUCGGAUGAGAGGGAUUGC ...(((.((.(((((.......((((((((((((((.....(((((.((.....))))))).....(((((......)))))..))).))))))))))).))))))).))) ( -31.30) >DroEre_CAF1 19872 111 + 1 AAAUUCCUCAUUUCUAGACUGCAUUUGAGCAUCCUACUGCUUGUCCGCGAUCCUCGAGGCACCAUUUAUUCCCGAAUGAAUAACAAGUGGUGCUUGAAUGAAAGGGAUUGC .((((((((((((...((.(((...((((((......))))))...))).))....(((((((((((((((......))))))...)))))))))))))))..)))))).. ( -31.90) >DroYak_CAF1 20301 111 + 1 AAGCUCCUUAUUUCUAGUCUUAAUUUAACCAUCCUGCUGCUUGUCCGCGAUCCUCGGGGCACCAUAUACUCCCGGAUGAGUAACAAGUGGUGCUUGGAUGAAAGGGAUUGC ..((((((..((((..((((.......(((((..((.((((..((((.((.....((....))......)).))))..)))).)).)))))....))))))))))))..)) ( -28.60) >DroAna_CAF1 21138 111 + 1 AAAUUUUUCUCUUCCAGAUUGAAUCUUCGAAUCCUUUUACUCGUCCGUGAUCCCCGGGGCACGAUGUAUUCACGGAAGAAUCGGAAUUGGUGCGAUGGCCUGAAGGACUGC ...((((((((((((.((((((....)).))))....(((((((((.((.....)).)).)))).))).....))))))((((.(.....).)))).....)))))).... ( -23.70) >consensus AAAUUCCUCAUUUCUAGCCUAAAUCUGAACAUCCUUCUACUUGUCCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGCUCGGAUGAGAGGGAUUGC ..............................................(((((((((.(((((((((.(((((......)))))....))))))))).))......))))))) (-21.75 = -21.70 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:53 2006