Locus 2383

Sequence ID 2L_DroMel_CAF1
Location 6,482,435 – 6,482,539
Length 104
Max. P 0.986561
window3841

overview

Window 1

Location 6,482,435 – 6,482,539
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -31.58
Consensus MFE -25.34
Energy contribution -26.94
Covariance contribution 1.60
Combinations/Pair 1.15
Mean z-score -2.46
Structure conservation index 0.80
SVM decision value 2.05
SVM RNA-class probability 0.986561
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6482435 104 + 22407834
CCCGGGUCAAAAAUAAUACCGGCUUCGAAUGCGAUGCCUGCAAAGAUUCAACCCAUUCUUGGGAUGGGUCAGCCUCAGCAACAGGCACAAGCCCAGCAACCGAA
..(((...............(((.(((....))).)))(((...((((((.((((....)))).)))))).((((.......)))).........))).))).. ( -32.90)
>DroSec_CAF1 4862 104 + 1
CCCGGGUCAAAAAUAAUACCGGCGUCGAAAGCGAUGCCUGCUAAGAUCCAACCCAUUCUUGGGAUGGGUCAGCCUCCGCAACAGGCACAAGCCCAGCAACCGAA
..(((...............(((((((....)))))))((((..((((((.((((....)))).)))))).((((.......))))........)))).))).. ( -40.30)
>DroSim_CAF1 5160 103 + 1
CCCGGGUCAAAAAUAAUACCGGCGUCAAAAGCGACGCCUGCUAAAAUCCAACCCAUUCUUGGGAUGGGUCAGCCUCCGCAACA-GCACAAGCCCAGCAACCGAA
...((((.............((((((......))))))((((...(((((.((((....)))).)))))..((....))...)-)))...)))).......... ( -33.20)
>DroEre_CAF1 4807 104 + 1
CCCGGGUCAAAAAUCAUCCCGGUGUCAAAAGCAACGCCUGCAAAGAUUCAACCCGUUCUUGGGAUAGGUCAGCCUCAACAACAGCCACAAGCCCAGCAACCGAA
...((((........((((((((((........)))))....((((..........)))))))))(((....)))...............)))).......... ( -21.90)
>DroYak_CAF1 4765 104 + 1
CCCGGUUCAAAAAUCAUCCCUGCGUCGAAAGCAAUGCCUGCAAAGAUUCAACCCGUUCUUGGGAUAGGUCAGCCUCAGCAACAGUCGCAGGCCCAGCAACCGAA
..((((((............(((.......)))..((((((...(((..(.((((....)))).)..))).((....)).......))))))...).))))).. ( -29.60)
>consensus
CCCGGGUCAAAAAUAAUACCGGCGUCGAAAGCGAUGCCUGCAAAGAUUCAACCCAUUCUUGGGAUGGGUCAGCCUCAGCAACAGGCACAAGCCCAGCAACCGAA
..(((...............(((((((....)))))))(((...((((((.((((....)))).)))))).((((.......)))).........))).))).. (-25.34 = -26.94 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:46 2006