Locus 2381

Sequence ID 2L_DroMel_CAF1
Location 6,478,886 – 6,479,006
Length 120
Max. P 0.589530
window3836

overview

Window 6

Location 6,478,886 – 6,479,006
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.56
Mean single sequence MFE -42.02
Consensus MFE -32.17
Energy contribution -31.73
Covariance contribution -0.44
Combinations/Pair 1.28
Mean z-score -2.33
Structure conservation index 0.77
SVM decision value 0.11
SVM RNA-class probability 0.589530
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6478886 120 - 22407834
GUGCUGCCAGAUCCCGCUUUUCGGUAUCAUGAGCUCAGACUCGGCGGAUCCCUUCUACUGGAUCCGUGUGAUCCUGGCCUCCAACCGUGGUACGCUCAUGGAGCUGGGUAUCUCGCCCAU
((((..(..(((.(((.....))).)))..(((..(((..(((((((((((........)))))))).)))..)))..))).....)..))))((((...))))(((((.....))))). ( -44.60)
>DroVir_CAF1 1252 120 - 1
AUGUUGUCAAAUUCCAUUGUUUGGCAUCAUGAGCUCCGAUUCGGCGGAUCCCUUCUACUGGAUCCGUGUCAUUCUCGCCUCGAAUCGUGGCACACUUAUGGAGCUGGGCAUCUCGCCCAU
(((.((((((((......)))))))).))).(((((((((...((((((((........)))))))))))......(((.((...)).)))........))))))((((.....)))).. ( -47.70)
>DroGri_CAF1 1254 120 - 1
CUGCUGUCAGAUUCCAUUGUUCGGCAUCAUGAGCUCCGAUUCGGCGGAUCCCUUCUACUGGAUACGUGUGAUCCUCGCCUCGAAUCGUGGCACACUCAUGGAGUUGGGCAUCUCGCCCAU
.(((((.(((......)))..)))))((((((((..((((((((((.((((........)))).)))(((.....)))..)))))))..))....))))))...(((((.....))))). ( -40.10)
>DroWil_CAF1 1254 120 - 1
UUGCUGUCAAAUUCCCUUGUUUGGCAUUAUGAGCUCCGAUUCCGCCGAUCCCUUCUACUGGAUUCGUGUGAUUCUGGCCUCCAAUCGUGGUACCCUGAUGGAGCUGGGUAUCUCACCCAU
....((((((((......)))))))).....((((((((.(((((.(((((........))))).))).)).)).((...(((....)))...))....))))))((((.....)))).. ( -37.20)
>DroMoj_CAF1 1255 120 - 1
GUGCUGUCAAAUCCCGUUGUUCGGCAUCAUGAGCUCCGAUUCAGCGGAUCCCUUCUACUGGAUACGUGUGAUACUGGCCUCGAAUCGUGGCACACUCAUGGAGCUGGGCAUUUCGCCCAU
((((((.(((......)))..))))))....((((((.((((((..((.....))..))))))....((((...(((((.((...)).))).)).))))))))))((((.....)))).. ( -41.00)
>DroAna_CAF1 2441 120 - 1
CUGCUGCCAGAUCCCGCUCUUCGGUAUUAUGAGCUCAGACUCCGCCGAUCCCUUCUACUGGAUCCGUGUUAUUCUGGCCUCUAACCGUGGUACCCUCAUGGAGCUGGGUAUCUCGCCCAU
.....((.((((((((((((..(((((((((((..((((...(((.(((((........))))).)))....))))..))).....)))))))).....))))).))).)))).)).... ( -41.50)
>consensus
CUGCUGUCAAAUCCCGUUGUUCGGCAUCAUGAGCUCCGAUUCGGCGGAUCCCUUCUACUGGAUCCGUGUGAUUCUGGCCUCGAAUCGUGGCACACUCAUGGAGCUGGGCAUCUCGCCCAU
.((.((((.(((......))).)))).))..(((((((.....((((((((........)))))))).........(((.(.....).))).......)))))))((((.....)))).. (-32.17 = -31.73 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:41 2006