| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,459,325 – 6,459,420 |
| Length | 95 |
| Max. P | 0.963197 |
| Location | 6,459,325 – 6,459,420 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 73.32 |
| Mean single sequence MFE | -10.53 |
| Consensus MFE | -9.65 |
| Energy contribution | -9.98 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6459325 95 - 22407834 GCUCAAG---ACAACAC---AACUGAAAUCGAAACGCAUUGAAUUUAGAUCAAAUUCGAGCUGGUAUCGAAUAUUAACCAUACAAACA----AAC--AUAAAC-AAAA ((((..(---......)---..(((((.((((......)))).))))).........))))((((...........))))........----...--......-.... ( -11.00) >DroVir_CAF1 3815 76 - 1 -------------------AAACUGAAAUCGAAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAAUUAAAAAC--A----A------UUAC-AAAA -------------------.........((((.((((.((((((((.....))))))))))..)).))))...............--.----.------....-.... ( -10.80) >DroPse_CAF1 11767 83 - 1 UU-----------ACACACAAACUGAAAUCGUAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAUACA------------CAC--ACCCACAAAAA ..-----------.........(((((.(((........))).))))).....((((((.......))))))........------------...--........... ( -9.40) >DroEre_CAF1 3482 91 - 1 GCCGAAG---ACAACAC---AACUGAAAUCGAAACGCAUUGAAUUUAGAUCAAAUUCGAGCUGGUAUCGAAUAUAAACCAU--AA--A----AAC--ACAAAC-AAAA .......---.......---........((((.((((.((((((((.....))))))))))..)).))))...........--..--.----...--......-.... ( -10.80) >DroAna_CAF1 2858 96 - 1 UCGUAAACACACAACAC---AACUGAAGUCGAAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUGAAACAAACA--------AACCCCUAAGC-AAAA (((((.........((.---...))...((((.((((.((((((((.....))))))))))..)).)))).)))))........--------...........-.... ( -11.80) >DroPer_CAF1 10899 95 - 1 UU-----------ACACACAAACUGAAAUCGUAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAUACACACACACAUACACAC--ACCCACAAAAA ..-----------.........(((((.(((........))).))))).....((((((.......)))))).......................--........... ( -9.40) >consensus UC___________ACAC___AACUGAAAUCGAAACGCAUUGAAUUUAGACCAAAUUCGAGCUGGUAUCGAAUAUAAAACAAACA___A____AAC__ACAAAC_AAAA ............................((((.((((.((((((((.....))))))))))..)).))))...................................... ( -9.65 = -9.98 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:38 2006