| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,456,041 – 6,456,153 |
| Length | 112 |
| Max. P | 0.856516 |
| Location | 6,456,041 – 6,456,153 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.60 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -20.48 |
| Energy contribution | -18.60 |
| Covariance contribution | -1.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.44 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6456041 112 - 22407834 AUCCUCAAUUCAUUUUCGUUUUUAUGGGGCUUGUUUGAUUUAA-AUUUGUC-A------AGUUUUUGCAUAUAAUACACUCGGUGUGUACGCUUCGCAUCAGCUCUCUCAAGCGGCCCUG .........................((((((.((((((.....-...(((.-(------(((...(((((((..........))))))).)))).))).........)))))))))))). ( -24.23) >DroSim_CAF1 24470 118 - 1 ACCAGCAAUUCAUUUUCGUUUUUAUGCGGUUUGCUUGAUUUAA-AGUUGUC-CAUUUGCAGUUUUUGCAUAUACUACACUCGGUGUGAACGCUUUGCAUCAGCACUUUCAAGCGGCCGUG .........................((((((.((((((.....-.((((..-....(((((.....((.((((((......))))))...)).))))).))))....)))))))))))). ( -25.30) >DroYak_CAF1 25001 117 - 1 ACCACCAAUUCAUCUUCUUACUUUUGCAGUUUGUUUUAUUCGUUUAUUGUUUAAUUU---GUUUUUACAUCAACUUUGACCGGUGUGAACGCUUUGCAUCAGCACAUUGAAGCGGCUGUG ..((((..((((........((..(((((..(((((...(((.(((..(((.....(---((....)))..)))..))).)))...)))))..)))))..)).....))))..)).)).. ( -18.92) >consensus ACCACCAAUUCAUUUUCGUUUUUAUGCGGUUUGUUUGAUUUAA_AAUUGUC_AAUUU__AGUUUUUGCAUAUACUACACUCGGUGUGAACGCUUUGCAUCAGCACUUUCAAGCGGCCGUG .........................((((((.((((((......................((....)).............(((((((.....))))))).......)))))))))))). (-20.48 = -18.60 + -1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:37 2006