Locus 2373

Sequence ID	2L_DroMel_CAF1
Location	6,446,173 – 6,446,286
Length	113
Max. P	0.971570

overview

Window 5

Location	6,446,173 – 6,446,286
Length	113
Sequences	6
Columns	113
Reading direction	forward
Mean pairwise identity	76.72
Mean single sequence MFE	-40.23
Consensus MFE	-23.07
Energy contribution	-23.68
Covariance contribution	0.61
Combinations/Pair	1.23
Mean z-score	-2.37
Structure conservation index	0.57
SVM decision value	1.68
SVM RNA-class probability	0.971570
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6446173 113 + 22407834
UACAUAUAUAAAGCAUUCAUACCUGGAUGCCAUCCCUGGCAGCCCAAGUGGCAACUGGUUUGAGUGCCGAUGAGAUCGCAUGGAUCUCCAUGCCCGCUUGCGACGUGUCCUCG
.((((.......(((((((.(((.((.((((((...(((....))).)))))).))))).)))))))((.((((...((((((....))))))...))))))..))))..... ( -38.90)
>DroPse_CAF1 24569 90 + 1
-----------------------UGGAUGCCAUCGCGGGCAGCCCAAGUGGCCACUGGCUUGAGGGCCGACGAAAUGGCAUGGAUUUCCAUGCCCGCCUUCGAGGUAUCCUCG
-----------------------.(((((((.(((.((((.((((....((((...))))...)))).........(((((((....))))))).)))).))))))))))... ( -47.00)
>DroGri_CAF1 27011 90 + 1
-----------------------UGGAUGCCAUCGCGUGCUGCCCAGGUGGCGCAUGGCUUGAGUGCCGAUGAAAUUGCAUGUAUUUCCAUGCCCUCCUUGGACGUAUCCUCG
-----------------------.((((((((((..((((..(....)..))))..(((......))))))).....(((((......)))))((.....))..))))))... ( -34.20)
>DroMoj_CAF1 39467 90 + 1
-----------------------UGGAUGCCGUCGCGAGCCGCCCAGGUGGCAUAGGGCUUCAGGGCCGAUGAGAUAGCAUGGAUUUCCAUGCCCUCCCUAGACGUGUCCUCG
-----------------------.((((((.(((....(((((....))))).(((((((....))))...(((...((((((....)))))).))).))))))))))))... ( -38.40)
>DroAna_CAF1 13936 90 + 1
-----------------------UGGAUUCCGUCACGGGCCGCCCACGUGGCUACUGGCUUCAGAGCCGAAGAGAUGGCGUGAAUCUCCAUGCCCGCCUGCGAGGUGUCCUCG
-----------------------.((((.((.((.(((((........(((((.(((....)))))))).......((((((......)))))).))))).)))).))))... ( -35.90)
>DroPer_CAF1 24933 90 + 1
-----------------------UGGAUGCCAUCGCGGGCAGCCCAUGUGGCCACUGGCUUGAGGGCCGACGAAAUGGCAUGGAUUUCCAUGCCCGCCUUCGAGGUAUCCUCG
-----------------------.(((((((.(((.((((.((((....((((...))))...)))).........(((((((....))))))).)))).))))))))))... ( -47.00)
>consensus
_______________________UGGAUGCCAUCGCGGGCAGCCCAAGUGGCAACUGGCUUGAGGGCCGAUGAAAUGGCAUGGAUUUCCAUGCCCGCCUUCGACGUAUCCUCG
........................((((((......((((.(((.....)))....(((......))).........((((((....))))))..)))).....))))))... (-23.07 = -23.68 +   0.61)

alignment

secondary structure

dotplot

Window 6

Location	6,446,173 – 6,446,286
Length	113
Sequences	6
Columns	113
Reading direction	reverse
Mean pairwise identity	76.72
Mean single sequence MFE	-37.90
Consensus MFE	-22.79
Energy contribution	-23.65
Covariance contribution	0.86
Combinations/Pair	1.14
Mean z-score	-2.10
Structure conservation index	0.60
SVM decision value	1.38
SVM RNA-class probability	0.948661
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6446173 113 - 22407834
CGAGGACACGUCGCAAGCGGGCAUGGAGAUCCAUGCGAUCUCAUCGGCACUCAAACCAGUUGCCACUUGGGCUGCCAGGGAUGGCAUCCAGGUAUGAAUGCUUUAUAUAUGUA
.((((.(.((.(....))).((((((....))))))).))))...((((.(((.(((...((((((((((....)))))..)))))....))).))).))))........... ( -40.80)
>DroPse_CAF1 24569 90 - 1
CGAGGAUACCUCGAAGGCGGGCAUGGAAAUCCAUGCCAUUUCGUCGGCCCUCAAGCCAGUGGCCACUUGGGCUGCCCGCGAUGGCAUCCA-----------------------
...((((.(((((..(((.(((((((....)))))))........(((((....(((...))).....))))))))..))).)).)))).----------------------- ( -42.00)
>DroGri_CAF1 27011 90 - 1
CGAGGAUACGUCCAAGGAGGGCAUGGAAAUACAUGCAAUUUCAUCGGCACUCAAGCCAUGCGCCACCUGGGCAGCACGCGAUGGCAUCCA-----------------------
...((((..(((((.((.(((((((......))))).........(((......))).....)).))))))).....((....)))))).----------------------- ( -31.00)
>DroMoj_CAF1 39467 90 - 1
CGAGGACACGUCUAGGGAGGGCAUGGAAAUCCAUGCUAUCUCAUCGGCCCUGAAGCCCUAUGCCACCUGGGCGGCUCGCGACGGCAUCCA-----------------------
...(((..((((..((((.(((((((....))))))).))))..(((((.....((((..........))))))).)).))))...))).----------------------- ( -37.00)
>DroAna_CAF1 13936 90 - 1
CGAGGACACCUCGCAGGCGGGCAUGGAGAUUCACGCCAUCUCUUCGGCUCUGAAGCCAGUAGCCACGUGGGCGGCCCGUGACGGAAUCCA-----------------------
...(((..((((((.(((.(.(((((((((.......)))))...(((((((....))).)))).))).).).))).)))).))..))).----------------------- ( -34.60)
>DroPer_CAF1 24933 90 - 1
CGAGGAUACCUCGAAGGCGGGCAUGGAAAUCCAUGCCAUUUCGUCGGCCCUCAAGCCAGUGGCCACAUGGGCUGCCCGCGAUGGCAUCCA-----------------------
...((((.(((((..(((.(((((((....)))))))........(((((....(((...))).....))))))))..))).)).)))).----------------------- ( -42.00)
>consensus
CGAGGACACCUCGAAGGCGGGCAUGGAAAUCCAUGCCAUCUCAUCGGCCCUCAAGCCAGUGGCCACCUGGGCUGCCCGCGAUGGCAUCCA_______________________
...(((.............(((((((....)))))))...((((((((......)))....(((.....))).......)))))..)))........................ (-22.79 = -23.65 +   0.86)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:31 2006