Locus 2367

Sequence ID 2L_DroMel_CAF1
Location 6,412,191 – 6,412,295
Length 104
Max. P 0.533658
window3815

overview

Window 5

Location 6,412,191 – 6,412,295
Length 104
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 90.94
Mean single sequence MFE -28.27
Consensus MFE -23.42
Energy contribution -24.42
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.83
SVM decision value 0.00
SVM RNA-class probability 0.533658
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6412191 104 - 22407834
UGCGCUGUCAAGUGGCUA-AAGUCAACAGGAGAGCAAAGCGUCUUGUGACAGGAGCUUUCGUCACUACUUAAAGCUUAGACGGACGCUCAAAGUUAAUAAAUUCA
....(((((...((((..-..))))((((((..((...)).)))))))))))((((.((((((...............)))))).))))................ ( -28.96)
>DroSec_CAF1 40433 103 - 1
UGCGCUGUCAAGUUCCUA-AAGUCAACAGGAGAGCAAAACGUCUUGUGACAGGAGCUUUCGUCACUAAUUAAAGCUUCGACGGACGCUCAAAGUUAAUGCAUUC-
.((((((((.........-..((((.(((((..(.....).))))))))).((((((((.((.....)).))))))))))))).))).................- ( -28.60)
>DroSim_CAF1 40931 103 - 1
UGCGCUGUCAAGUUGCUA-AAGUCAACAGGAGAGCAAAGCGUCUUGUGACAGGAGCUUUCGCCACUACUUAAAGCUUCGACGGACGCUCAAAGUUAAUGAAUUC-
.((((((((.........-..((((.(((((..((...)).))))))))).((((((((...........))))))))))))).))).................- ( -29.90)
>DroEre_CAF1 39051 102 - 1
UGCGCUGUCAAGUUGCCA-AAGUCAACAGGAAAGGAAAGCGUCUUGUGACAGCAGCUUUCGUCACCACUUAAAGCUU-AACGGACGCUCAAAGUUAAUGACUUU-
.(((((((.(((((....-((((.....((..(.(((((((((....)))....)))))).)..))))))..)))))-.)))).)))..((((((...))))))- ( -24.80)
>DroYak_CAF1 48757 104 - 1
CGCGCUGUCAAGUUGCCAAAAGUCAACAGGAGAGGAAAGCGUCUUGUGACAGGAGCUUUCGUCACCACUUAAAGCUUCAACGGGCGCUCAAAGUUAAUGAUUUC-
.(((((.....((((.(....).)))).((.((.((((((.(((((...))))))))))).)).))................))))).................- ( -29.10)
>consensus
UGCGCUGUCAAGUUGCUA_AAGUCAACAGGAGAGCAAAGCGUCUUGUGACAGGAGCUUUCGUCACUACUUAAAGCUUCGACGGACGCUCAAAGUUAAUGAAUUC_
.((((((((............((((.(((((..(.....).))))))))).((((((((...........))))))))))))).))).................. (-23.42 = -24.42 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:21 2006