Locus 2364

Sequence ID 2L_DroMel_CAF1
Location 6,409,729 – 6,409,842
Length 113
Max. P 0.957793
window3808

overview

Window 8

Location 6,409,729 – 6,409,842
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 94.60
Mean single sequence MFE -37.56
Consensus MFE -32.88
Energy contribution -34.16
Covariance contribution 1.28
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.88
SVM decision value 1.48
SVM RNA-class probability 0.957793
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6409729 113 - 22407834
AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCGGCUACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG
.(.((((((((((.....(((((((..((.(((((((........)))))))))...))))....)))..(((((((........)))))))........)))))))))).). ( -41.80)
>DroSec_CAF1 38013 113 - 1
AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCAGCAACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG
.(.((((((((((.....(((((((..((.(((((((........)))))))))...))))....)))....(((((........)))))..........)))))))))).). ( -37.70)
>DroSim_CAF1 38494 113 - 1
AGGAGACGGAAAGACAGAGCAGAAGUCAGACUGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCGGCAACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG
.(.((((((((((........(((((..(((..((((........))))..).)).............(....)...)))))...(((((.....))))))))))))))).). ( -35.60)
>DroEre_CAF1 36594 112 - 1
AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCG-AGCAUUCACCGCUGGCUCCUUUUCAUCAGGCGGCUACACCACUUCGAAGAUGUGCGAAAUAUCCUUUCUGUCUGCG
.(.((((((((((...(((.((.((((((..(((.(-......).))))))))).)).))).(((((.((.....)).))).)).(((((.....))))))))))))))).). ( -36.20)
>DroYak_CAF1 42015 112 - 1
AGGAGACGGAAAGACUGAACAGAAGUCAGACCGGCG-AGCAUUCACCGCUGCUUCCUUUUCAACACGCAGCUACAUCACUCCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG
.(.((((((((((..((((..((((.(((..(((.(-......).))))))))))...))))........(((((((........)))))))........)))))))))).). ( -36.50)
>consensus
AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCGGCUACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG
.(.((((((((((...((..(((((..((.(((((((........))))))))).)))))..))......(((((((........)))))))........)))))))))).). (-32.88 = -34.16 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:15 2006