| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,405,021 – 6,405,135 |
| Length | 114 |
| Max. P | 0.591147 |
| Location | 6,405,021 – 6,405,135 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.90 |
| Mean single sequence MFE | -41.06 |
| Consensus MFE | -24.93 |
| Energy contribution | -27.29 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6405021 114 - 22407834 UCUUUCAGCCUAGCCAGGUUGAGAAAGGUCGGCAGCGG---CAAUG---GUGCCAGUGGCAGUAUGGCCAAAAGACCUGUUAAUUAACCAAAGCGGGGCGGUGGACUCUAAAAGGGGGGG (((.((.((((.((..((((((...(((((((((.((.---...))---.))))..((((......))))...))))).....))))))...)).)))))).)))((((......)))). ( -41.70) >DroSec_CAF1 33345 114 - 1 UCUUUCAGCCUAGCCGAGUUGAGAAAGGUCGGCGGCGG---CAAUG--GGUGCCAGUGGCAGUGUGGCCAAAAGACCUGUUAAUUAACCAAAGCGAGGCAGUGGACUCCAAAAGGGGGG- .......((((.((...(((((...(((((...(((.(---((...--..((((...)))).))).)))....))))).....)))))....)).))))......((((....))))..- ( -37.30) >DroSim_CAF1 33866 114 - 1 UCUUUCAGCCUAGCCGGGUUGAGAAAGGUCGGCGGCGG---CAAUG--GGUGCCAGUGGCAGUGUGGCCAAAAGACCUGUUAAUUAACCAAAGCGGGGCAGUGGACUCCAAAAGGGGGG- .......((((.((..((((((...(((((...(((.(---((...--..((((...)))).))).)))....))))).....))))))...)).))))......((((....))))..- ( -42.10) >DroEre_CAF1 31830 102 - 1 UCUUUCGGCCUAGCCG-GUUGAGAAAGGUCGGCUAUGGUGCCAG------------UAGCAGUGUGGCCAGAAGACCUGUUAAUUAACCAAAGCUGGGAAGUGGACUCCAGAGGG----- .(((((..((((((.(-(((((...((((((((((((.(((...------------..))).)))))))....))))).....))))))...))))))...(((...))))))))----- ( -38.50) >DroYak_CAF1 37151 115 - 1 UCUUUCAGCCUAGCCGGGUUGAGAAAGGUCGGCGAUGGUGCCAGUGCCAGUGGCAGUGGCAGUGUGGCCAAAAGACCUGUUAAUUAACCAAAGCAGGGAAGUGGACUCCAAAGGG----- ..(((((((((....)))))))))..(((((((.(((.(((((.((((...)))).))))).))).)))......((((((..........))))))......))))........----- ( -45.70) >consensus UCUUUCAGCCUAGCCGGGUUGAGAAAGGUCGGCGGCGG___CAAUG___GUGCCAGUGGCAGUGUGGCCAAAAGACCUGUUAAUUAACCAAAGCGGGGCAGUGGACUCCAAAAGGGGGG_ (((....((((.((..((((((...(((((((((................))))..((((......))))...))))).....))))))...)).))))...)))((((....))))... (-24.93 = -27.29 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:10 2006