| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,403,671 – 6,403,769 |
| Length | 98 |
| Max. P | 0.782161 |
| Location | 6,403,671 – 6,403,769 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.52 |
| Mean single sequence MFE | -38.53 |
| Consensus MFE | -27.62 |
| Energy contribution | -27.98 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6403671 98 + 22407834 A--------GCAA-AGGGGAAAGCCGGAAAACUGCGGCGUGCCAA---GCGCCCGGAGUGUGGUUUUUCCGGCUGAUGGUU-----GGCCAAUGCGAUGGCAGCCGAGGCGGACG .--------....-..((((((((((....(((.(((.((((...---))))))).))).)))))))))).(((..(((((-----(.(((......))))))))).)))..... ( -40.40) >DroSec_CAF1 31838 99 + 1 A--------GCAAAAGGGGAAAGCCGGAAAACUGCGGAGUGCCAA---GCGCCCGGAGUGUGGUUUUUCCGGCUGACGGUU-----GGCCAAUGCGACGGCAGACAAGGCGGACG (--------((.....((((((((((....(((.(((.((((...---))))))).))).)))))))))).)))....(((-----.(((..(((....))).....))).))). ( -38.10) >DroSim_CAF1 32327 99 + 1 A--------GCAAAAGGGGAAAGCCGGAAAACUGCGGCGUGCCAA---GCGCCCGGAAUGUGGUUUUUCCGGCUGACGGUU-----GGCCAAUGCGACGGCAGACGAGGCGGACG (--------((.....((((((((((.(...(((.(((((.....---))))))))..).)))))))))).)))....(((-----.(((..(((....))).....))).))). ( -36.80) >DroEre_CAF1 30329 95 + 1 A--------GCAA-AGGGGAAAGCCGGAAAAAUGCGGCGUGCCAA---GCGCCCGGAGUGUGGUUUUUCCGGCUGAUGGCU-----GGCCACUGC---GGCAACUGAGGCGGGCA (--------((..-..((((((((((.(....((.(((((.....---)))))))...).)))))))))).)))....(((-----.(((.(...---(....).).))).))). ( -37.20) >DroYak_CAF1 35561 108 + 1 AGGGGCAAGGCAA-AGGGAAAAUCCGGAAAACUGCGGCGUGCCAA---GCGCCCGGAGUGUGGUUUUUCCGGCUGAUGGCCACUGCGGCAGCUGA---GGCAGCUGAGGCGAGCA .(((((..(((..-.(((((((.(((....(((.(((.((((...---))))))).))).)))))))))).)))....))).))((..((((((.---..))))))..))..... ( -44.10) >DroAna_CAF1 26135 96 + 1 C--------AAAAAAAGGGAAAACCAGAAAACUGUGGCCUGCCAACAGGCGCCCGGCGUGCGUUUUUUCCGGCUUUUGGCU-----GGCAA------UGGCAGCCAUGGCAGGCG .--------.......((.....))...........((((((((...((...))(((.(((....((.(((((.....)))-----)).))------..)))))).)))))))). ( -34.60) >consensus A________GCAA_AGGGGAAAGCCGGAAAACUGCGGCGUGCCAA___GCGCCCGGAGUGUGGUUUUUCCGGCUGAUGGCU_____GGCCAAUGC___GGCAGCCGAGGCGGACG ................((((((((((....(((.(((.((((......))))))).))).))))))))))......(.(((......(((........)))......))).)... (-27.62 = -27.98 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:09 2006