Locus 236

Sequence ID 2L_DroMel_CAF1
Location 684,227 – 684,318
Length 91
Max. P 0.938355
window376

overview

Window 6

Location 684,227 – 684,318
Length 91
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 71.59
Mean single sequence MFE -31.73
Consensus MFE -19.05
Energy contribution -18.83
Covariance contribution -0.22
Combinations/Pair 1.24
Mean z-score -1.73
Structure conservation index 0.60
SVM decision value 1.29
SVM RNA-class probability 0.938355
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 684227 91 - 22407834
GUUGCU----------GUUGAUGGCGUUGCAUGGUCAGCGUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCCACA-GA-AGAGCAAAAGAA------CCCAG
.(((((----------.((...(((((.((.((..(((((.......))))))).))))))).(((((((...)))))))..-.)-).))))).....------..... ( -28.30)
>DroPse_CAF1 90745 100 - 1
--UGUUCGUUUGCCGCGCGAUUGGCGUUGCAUGAACAGCAUUUGAUUUGUGGCGCGCACGCCCUGGCAACAUUGUUGCUAGA-UC-AGAGCAACCGAGAGUGUC-----
--((((((..(((.((((.....)))).)))))))))((.((((((....((((....))))((((((((...)))))))))-))-))))).(((....).)).----- ( -35.80)
>DroEre_CAF1 81396 91 - 1
--UGUU----------GUUGAUGGCGUUGCAUGGUCAGCGUUUGAUUUGUUGCGCGCACGCC-UGGCAACAUUGUUGCCACA-GAAAGAGCA----AGAGCAACAGCAU
--((((----------((((..(((((.((.((..(((((.......))))))).)))))))-(((((((...)))))))..-.........----....)))))))). ( -31.20)
>DroWil_CAF1 44877 81 - 1
--UGUU----------GUUGAUGCUAUUGCAUGGUCAACAUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCUAGCAAC-AUUGCACC---------------
--((((----------(.(.((((....)))).).)))))..((...((((((((....))..(((((((...))))))))))))-)...))..--------------- ( -26.50)
>DroYak_CAF1 77418 92 - 1
--UGUU----------GUUGAUGGCGUUGCAUGGUCAGCGUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCCACA-GAAAGAGCG----AGAGCAACAGCAU
--((((----------((((...((((.(((.((((((...))))))...))))))).((((((((((((...)))))))..-...)).)))----....)))))))). ( -32.80)
>DroPer_CAF1 92662 100 - 1
--UGUUCGUUUGCCGCGCGAUUGGCGUUGCAUGAACAGCAUUUGAUUUGUGGCGCGCACGCCCUGGCAACAUUGUUGCUAGA-UC-AGAGCAACCGAGAGUGUC-----
--((((((..(((.((((.....)))).)))))))))((.((((((....((((....))))((((((((...)))))))))-))-))))).(((....).)).----- ( -35.80)
>consensus
__UGUU__________GUUGAUGGCGUUGCAUGGUCAGCAUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCCACA_GA_AGAGCAAC__AGAG___C_____
..((((................(((((.((.((..(((((.......))))))).))))))).(((((((...)))))))........))))................. (-19.05 = -18.83 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:48 2006