| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,395,466 – 6,395,566 |
| Length | 100 |
| Max. P | 0.986030 |
| Location | 6,395,466 – 6,395,566 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.43 |
| Mean single sequence MFE | -34.44 |
| Consensus MFE | -17.55 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.51 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.986030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6395466 100 + 22407834 -GGAGCCAUGAUGCUGCAGCUUCAGCUGGA------GCUGAAGCAGGAGCAAGAGUUGAAUCCUUAGAGCCCUGGCAGCAUCUGAUAAACAACGAGCAGUGGCAACA -(..(((((((((((((.((((((((....------))))))))(((.((..(((.......)))...))))).))))))))((.....)).......)))))..). ( -39.70) >DroSec_CAF1 23852 79 + 1 -GGAGCCAUGAUGCUGCAGCUUCAGCUG------------G------AGCAGGAGUUGAAUCCUUUGA---------GCAUCAGAUAAACAACGAGCAGUGGCAACA -(..(((.(((((((.(((((((....)------------)------)))((((......)))).)))---------))))))........((.....)))))..). ( -25.30) >DroSim_CAF1 24029 85 + 1 -GGAGCCAUGAUGCUGCAGCUUCAGCUGGA------GCUGG------AGCAGGAGUUGAAUCCUUGGA---------GCAUCAGAUAAACAACGAGCAGUGGCAACA -(..(((.(((((((.((((((((((....------)))))------)))((((......)))))).)---------))))))........((.....)))))..). ( -35.20) >DroEre_CAF1 21910 104 + 1 CGGUACCAUGGAGCUGCAGCUUCGGCUGGAUCAGGAGCGGGAGCGGGAGCGGGAGCUGCAGGCUGGGAGCCCUGGCAGCAUCAGAUAAACAACGGGCAGUGGCA--- .....((.(((..((((((((((.(((...((....((....)).))))).)))))))))).))))).((((((.(..................).))).))).--- ( -37.57) >consensus _GGAGCCAUGAUGCUGCAGCUUCAGCUGGA______GCUGG______AGCAGGAGUUGAAUCCUUGGA_________GCAUCAGAUAAACAACGAGCAGUGGCAACA ....(((((...(((.(((((((.(((....................))).))))))).....(((((............))))).........))).))))).... (-17.55 = -18.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:08 2006