Locus 2358

Sequence ID 2L_DroMel_CAF1
Location 6,390,800 – 6,390,892
Length 92
Max. P 0.862884
window3800

overview

Window 0

Location 6,390,800 – 6,390,892
Length 92
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 80.70
Mean single sequence MFE -29.53
Consensus MFE -16.64
Energy contribution -16.92
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -2.58
Structure conservation index 0.56
SVM decision value 0.84
SVM RNA-class probability 0.862884
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6390800 92 - 22407834
GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGC---------ACA-----CAUCCACAUC
(((.(((((((((((((....))))))))(((.(((..(((((....))))).......((..-----.))))).)))...)))---------)).-----..)))..... ( -33.10)
>DroSec_CAF1 19136 91 - 1
GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGC---------ACA------GUCCACAUC
(((.(((((((((((((....))))))))(((.(((..(((((....))))).......((..-----.))))).)))...)))---------)).------.)))..... ( -34.10)
>DroSim_CAF1 19313 91 - 1
GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGC---------ACA------GUCCACAUC
(((.(((((((((((((....))))))))(((.(((..(((((....))))).......((..-----.))))).)))...)))---------)).------.)))..... ( -34.10)
>DroEre_CAF1 17231 103 - 1
GGAAGUGCUGGAAUUUUCGAACAAGUUCCGCCUUUCAAGCUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGCACUGG---CACAGUCCACGUCCACAUC
((((((((((((((((......)))))))(((.(((.(((((................)))))-----...))).)))...))))))((---......))...)))..... ( -28.49)
>DroYak_CAF1 22448 103 - 1
GGAAGUGCUGGAAUUUUUGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACUGAACGCCACUGGCACUGG---CACAGUCCACGUCCACGUU
(((.((((((((((((......)))))))(((......(((((....))))).......(((.-----.......)))...)))...))---)))..)))(((....))). ( -31.10)
>DroPer_CAF1 27094 97 - 1
GGAAAUGCAAGAAUUUUCGAACAAGAUCCGCUUUUCAAGUUGACAAAUCAACAUCAUCCGGUGGACAAACAGAACGA--CGGGAACGAACAGAACA------GU------U
((((((......))))))...........(((.(((..(((((....)))))....(((.((.(..........).)--).))).......))).)------))------. ( -16.30)
>consensus
GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU_____ACCGAACGGCACUGGC_________ACA______GUCCACAUC
(((((.((.(((((((......))))))))))))))..(((((....)))))......(((........)))....................................... (-16.64 = -16.92 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:07 2006