| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,386,070 – 6,386,180 |
| Length | 110 |
| Max. P | 0.621857 |
| Location | 6,386,070 – 6,386,180 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.55 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -23.29 |
| Energy contribution | -21.60 |
| Covariance contribution | -1.69 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6386070 110 - 22407834 GCUACGCUGCAAGGCGAAAGGUAGUCCGGAGCCGACCAUCAAAUGGAAACGCGAUGACGGCAACAAAAUCGUUAUUAACAAGACGCUCGAGGGUGAGUCCAAUC------CUUAGA-- ((..((((....)))).......(((..(.((((..((((...((....)).)))).))))(((......))).....)..)))))..((((((.......)))------)))...-- ( -27.00) >DroVir_CAF1 22149 101 - 1 CCUGCGCUGCAAGGCGAAAGGCAGCCCCGAGCCAUCCAUCAAAUGGAAACGAGAUGACAACCAUAAAAUAGUCAUCAACAAGACGCUCGAAGGUAAGUCCG----------------- (((..(((((....(....))))))..(((((..(((((...))))).....((((((............))))))........))))).)))........----------------- ( -28.40) >DroGri_CAF1 21936 101 - 1 CCUCCGUUGCAAGGCGAAAGGCAGCCCAGAGCCGUCCAUCAAAUGGAAACGAGAUGACAACCAUAAAAUUGUCAUCAACAAGACGCUCGAAGGUGAGUCCA----------------- .(((........(.(....).).(((..((((.(((.......((....)).((((((((........)))))))).....)))))))...))))))....----------------- ( -29.20) >DroEre_CAF1 12516 110 - 1 CCUGCGAUGCAAAGCGAAAGGUAGUCCGGAGCCGACCAUCAAGUGGAAACGCGAUGACGGCAAUAAAAUCGUUGUCAACAAGACGCUCGAGGGUGAGUCCAGGC------CUUAGG-- (((.(((.((..(((((..((....))...((((..((((..(((....))))))).)))).......)))))(((.....))))))))(((((........))------))))))-- ( -33.20) >DroYak_CAF1 17664 116 - 1 GCUGCGCUGCAAGGCGAAAGGUAGUCCGGAGCCGACCAUCAAGUGGAAACGCGAUGACGGCAAUAAAAUCGUUGUCAACAAGACGCUCGAGGGUGAGUCCAAGCCCAGUUCUUUGG-- (((.((((....))))...)))...(((((((((..((((..(((....))))))).)))).......(((.((((.....))))..)))((((........)))).....)))))-- ( -35.40) >DroMoj_CAF1 19872 112 - 1 ACUGCGCUGCAAGGCGAAAGGCAGCCCAGAGCCAUCCAUCAAAUGGAAACGGGAUGACAACCAUAAAAUUGUCAUCAACAAGACGCUCGAAGGUAAGUCCGACC------GACCGACC .(((.(((((....(....)))))).))).....(((((...)))))..(((((((((((........)))))))).....(((...(....)...)))...))------)....... ( -33.40) >consensus CCUGCGCUGCAAGGCGAAAGGCAGCCCGGAGCCGACCAUCAAAUGGAAACGCGAUGACAACAAUAAAAUCGUCAUCAACAAGACGCUCGAAGGUGAGUCCAA_C______CUU_G___ .....(((((....(....))))))...((((...((((...))))......((((((((........))))))))........))))...((.....)).................. (-23.29 = -21.60 + -1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:06 2006