| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,379,070 – 6,379,175 |
| Length | 105 |
| Max. P | 0.949405 |
| Location | 6,379,070 – 6,379,175 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.67 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.949405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6379070 105 + 22407834 -CAACA-UCAACAUCC----U-AU-----GCAUUUUUUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA -.....-.........----.-..-----(((((...(((((...(((((((..(..(((.........))).)..))))))).....))))).))))).................. ( -22.90) >DroVir_CAF1 13873 89 + 1 ACAAAACUGUACAGCC----AAAA-----GCUUUU-----G--CUACUCACAUUUGUCAAUCACAAUCACCGAAUUCGUCGGCACAUCCCCACCG------------AAGCCAUUGA ...............(----((..-----(((((.-----.--..........((((.....))))...((((.....))))............)------------))))..))). ( -9.20) >DroSec_CAF1 7496 102 + 1 -CAACA-UCAACAUCC----U-AU-----GCAU---UUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA -.....-.........----.-..-----((((---((((((...(((((((..(..(((.........))).)..))))))).....))))).))))).................. ( -24.10) >DroSim_CAF1 7574 102 + 1 -CAACA-UCAACAUCC----U-AU-----GCAU---UUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA -.....-.........----.-..-----((((---((((((...(((((((..(..(((.........))).)..))))))).....))))).))))).................. ( -24.10) >DroEre_CAF1 5623 111 + 1 -AUGCA-UCAACCUCCUCUGC-AUCCUCUGCAUUG---GGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUGGUGGGUCCUUCGCCCACAAUGCCAAUGCCAAUCCCAUUCA -.....-............((-((.....((((((---((((....(........)..((((....(((((.....)))))))))...)))).))))))..))))............ ( -26.70) >DroYak_CAF1 10587 104 + 1 -AAACA-UCAACAUCC----C-AUUCCCAGCAUUCGCUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGC------CAUUCA -.....-.........----.-...((((((....)))))).........((((.(((((.........)))...((((((((.....)))))))).)).)))).------...... ( -27.10) >consensus _CAACA_UCAACAUCC____U_AU_____GCAUU__UUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA .......................................((((..........((((.....)))).........((((((((.....))))))))))))................. (-14.04 = -14.67 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:04 2006