| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,371,997 – 6,372,116 |
| Length | 119 |
| Max. P | 0.847898 |
| Location | 6,371,997 – 6,372,116 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.31 |
| Mean single sequence MFE | -31.82 |
| Consensus MFE | -25.45 |
| Energy contribution | -26.32 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6371997 119 + 22407834 AUUUCGGGGAUUGCUUUGUUUGUCAUU-UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUCUGAAUGAUUUUGGUGUGCCUCUUUUGGCUUAAAUAGCAAUAUAUUCAGAUACCAAUA .....((((((......(((.((((.(-(((.(....).)))).)))).)))....))))(((((((((...(((.((((((......)))....))).)))..))))))))).)).... ( -34.50) >DroSec_CAF1 519 119 + 1 AUUUCGGGUAUUGCUUUGUUUGUCAUC-UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUUUGAAUGAUUUUGGUGUGCCUCUUUUGGCAUAAAUAGCAAUAUAUUCAGAUACCAAUA .......((((((((.....(((((..-.(((((((..(((((..(((........)))(((....)))...))))))))))))...))))).....))))))))............... ( -29.60) >DroSim_CAF1 528 119 + 1 AUUUGGGGGAUUGCUUUGUUUGUCAUU-UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUUUGAAUGAUUUUGGUGUGCCUCUUUUGGCAUAAAUAGCAAUAUAUUCAGAUACCAAUA ..((((.((((......(((.((((.(-(((.(....).)))).)))).)))....))))(((((((((...(((.((((((......)))))).....)))..))))))))).)))).. ( -34.80) >DroYak_CAF1 1874 120 + 1 AUUUCGGGGAUUGCUUUGUUUGUCAUUUUGGGGUAUUUGCCAGCUGACCAACUACUGACUAUUUGAACGAUUUUGUUGUGCCUCUUUUGGCAUAAAUAGCAAUUUAUUCAGACACCCAAC .....(((.........(((.((((..((((.(....).)))).)))).))).........((((((..(..((((((((((......))))))....)))).)..))))))..)))... ( -28.40) >consensus AUUUCGGGGAUUGCUUUGUUUGUCAUU_UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUUUGAAUGAUUUUGGUGUGCCUCUUUUGGCAUAAAUAGCAAUAUAUUCAGAUACCAAUA .....((((((......(((.((((...(((.(....).)))..)))).)))....))))(((((((((...(((.((((((......)))))).....)))..))))))))).)).... (-25.45 = -26.32 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:00 2006