| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,366,586 – 6,366,681 |
| Length | 95 |
| Max. P | 0.601393 |
| Location | 6,366,586 – 6,366,681 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 96.52 |
| Mean single sequence MFE | -17.30 |
| Consensus MFE | -16.67 |
| Energy contribution | -16.67 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6366586 95 + 22407834 CACCGACCGAUCCC-CCUCGCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGCAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((....-....(((....((.......))((....))))).....((((((((............))))))))...)))))))..... ( -17.30) >DroSec_CAF1 11457 95 + 1 CACCGACCGAUCCC-CCUCGCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGAAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((....-....(((....((.......))((....))))).....((((((((..(......)..))))))))...)))))))..... ( -17.80) >DroEre_CAF1 11361 96 + 1 CAACGACCGAUACCUCCUCUCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGCAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((..........................(((....))).......((((((((............))))))))...)))))))..... ( -16.80) >consensus CACCGACCGAUCCC_CCUCGCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGCAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((..........................(((....))).......((((((((............))))))))...)))))))..... (-16.67 = -16.67 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:55 2006