| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,354,572 – 6,354,671 |
| Length | 99 |
| Max. P | 0.522099 |
| Location | 6,354,572 – 6,354,671 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.16 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -9.03 |
| Energy contribution | -8.78 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.41 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6354572 99 - 22407834 U----AUAAUUCGUAGACAGCGAUUUUUUAUCACUGUUUGCAAAUCAAUUGC-GUUUGAUUGCAUUCAAUUGAAUUUAUUUCGAUGCUCAUUAGCCUAAACCAU .----.......((((((((.(((.....))).)))))))).((((((....-..)))))).......((((((.....))))))(((....)))......... ( -20.30) >DroPse_CAF1 53193 103 - 1 ACUGGCUGCUCCAUUGUGAGUGCUUUCUAAUCGUUGUGUGCAAAUCAUUUGC-GAUUGAUUGCAUUCAAUUGAAUUCAUUCCGAUGCCAAUUAGCUUGACACAU .(.(((((...(((((.(((((..(((.....((((.((((((.(((.....-...))))))))).)))).)))..)))))))))).....))))).)...... ( -26.00) >DroEre_CAF1 2270 99 - 1 A----GUAAUCCGUUGCGGUGGAUUUUUUAUCACUGUUUGCAAAUCAAUUGC-GAUUGAUUGCAUUCAAUUGAAUUUAUUUCGAUGCUCAUUAGCCCUAGCCAU .----((((((.((((((((.(((((...............))))).)))))-))).)))))).....((((((.....))))))(((....)))......... ( -20.66) >DroWil_CAF1 1917 90 - 1 U----UUAUUC------AAUUGAUUUCUAAUCACUGUUUGCAAAUCAUUCGCCCAUUGAUUGCAUUCAAUUGAAAUUAUUUUGGUGCCAAUUAUA----CAAAU .----...(((------((((((....((((((.((...((.........)).)).))))))...)))))))))......(((....))).....----..... ( -14.30) >DroYak_CAF1 2473 99 - 1 U----CUAAUCCGUUGAUGUGGACUUUUUAUCACUGUUUGCAAAUCAAUUGC-GAUUGAUUGCAUUCAAUUGAGUUUAUUUCGAUGCUUAUUAGCACCAACCAU .----(((((.((((((.((((((((..(.....((..(((((.(((((...-.))))))))))..)))..)))))))).))))))...))))).......... ( -22.00) >DroPer_CAF1 34979 103 - 1 UCUGGCUGCUCCAUUGUGAGUGCUUUCUAAUCGUUGUGUGCAAAUCAUUUGC-GAUUGAUUGCAUUCAAUUGAAUUCAUUUCGAUGCCAAUUAGCUUGACACAU ..((((..........(((((((..((.((((((.(((.......)))..))-))))))..)))))))((((((.....))))))))))............... ( -27.70) >consensus U____CUAAUCCGUUGAGAGUGAUUUCUAAUCACUGUUUGCAAAUCAAUUGC_GAUUGAUUGCAUUCAAUUGAAUUUAUUUCGAUGCCAAUUAGCCUGACACAU ..................................((..(((((.(((.........))))))))..))((((((.....))))))................... ( -9.03 = -8.78 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:50 2006