| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,353,024 – 6,353,115 |
| Length | 91 |
| Max. P | 0.940276 |
| Location | 6,353,024 – 6,353,115 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Mean single sequence MFE | -35.00 |
| Consensus MFE | -24.48 |
| Energy contribution | -24.78 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.940276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6353024 91 - 22407834 U-----------UGGUUUCUCUGACCAGGUCAAUAUCGAUCGUGUCGGGCGCAGGAUUUGCUGUGCCUCGCUGAGCACAAUGGUUAGUAGGAGUCCAGGC----UC-- (-----------(((((((((((((((((((......))))(((((((((((((......))))))).))....))))..))))))).))))).))))..----..-- ( -37.80) >DroSec_CAF1 699 91 - 1 U-----------UGGUUCCUCUGACCAGGUCAAUAUCGGUCGUGUCGGGCGCAGGAUUUGCUGUGCCUUGCUGAGCACAAUGGUUAGUAGGAGUCCAGCC----UC-- (-----------((((((((((((((((((....)))(.(((.((.((((((((......)))))))).))))).)....))))))).))))).))))..----..-- ( -37.70) >DroSim_CAF1 699 91 - 1 U-----------UGGUUCCUCUGACCAGGUCAAUAUCGGUCGUGUCGGGCGCAGGAUUUGCUGUGCCUCGCUGAGCACAAUGGUUAGUAGGAGUCCAGCC----UC-- (-----------((((((((((((((((..(......)..)(((((((((((((......))))))).))....))))..))))))).))))).))))..----..-- ( -39.20) >DroEre_CAF1 694 98 - 1 UUGGUUUCAU--UGGUUCCAUUGGCCAGGUCAAUAUCGGUCGUGUCGGGCGCAGGAUUUGCUGUGCCUCGCUGAGCACAAUGGUUAGUAGGAGCCUAUCC-------- ..........--.(((((((((((((((..(......)..)(((((((((((((......))))))).))....))))..)))))))).)))))).....-------- ( -38.50) >DroYak_CAF1 741 91 - 1 U-----------UGGUUCCUUUGGCCAGGUCAAUAUCGGUCGUGUCGGGCGCAGGAUUUGCUCUGCCUCGCUGAGCACAAUGGUUAGUACUAGUCUAUCU----UU-- (-----------((((....((((((((..(......)..)((((((((.(((((......)))))))))....))))..))))))).))))).......----..-- ( -25.20) >DroMoj_CAF1 10709 96 - 1 ----------UGUGGUCCAUUU--GCAGGGCAGUAUCGCUCCUGUCGCGCCCAGGAUUUUAAUUGCCUGGCGGAGCACAAUGGUGCGUAGCAAACAUGCCAAACUUUU ----------((((.(((....--(((((((......)).)))))...(((.(((..........))))))))).)))).((((..((.....))..))))....... ( -31.60) >consensus U___________UGGUUCCUCUGACCAGGUCAAUAUCGGUCGUGUCGGGCGCAGGAUUUGCUGUGCCUCGCUGAGCACAAUGGUUAGUAGGAGUCCAGCC____UC__ ............(((((((((((((((((((......))))((((..((((.(((..........)))))))..))))..))))))).))))).)))........... (-24.48 = -24.78 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:48 2006