| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,344,879 – 6,344,969 |
| Length | 90 |
| Max. P | 0.621569 |
| Location | 6,344,879 – 6,344,969 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 76.63 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -13.69 |
| Energy contribution | -14.30 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6344879 90 - 22407834 UAAGUCUUGUGAAUAAUUUCUUACCUUCGGGACUGAUGGAGGCCAUGCUGCGCAGCAACUCCUUCUCCUUCUCGUCAGUACAAUACUCAG ..(((.((((.............((....))(((((((((((...((((....))))...)))))........)))))))))).)))... ( -21.90) >DroPse_CAF1 86218 68 - 1 ----------------------GCCCUCCGGACUAAUGGAGGCCAUGCUGCGCAGCAGCUCCUUUUCCUUCUCAUCUGUGCAGUAUUCAG ----------------------(.((((((......)))))).)(((((((((((....................))))))))))).... ( -22.75) >DroSec_CAF1 35983 90 - 1 UAAGUCUUAUGAAUAAUUUCUUACCUUCGGGACUGAUGGAGGCCAUGCUGCGCAGCAACUCCUUCUCCUUCUCGUCAGUACAGUACUCAG .........(((...........((....))(((((((((((...((((....))))...)))))........)))))).......))). ( -19.30) >DroSim_CAF1 37928 90 - 1 UAAGUCUUAUGAAUAAUUUCCUACCUUCGGGACUGAUGGAGGCCAUGCUGCGCAGCAACUCCUUCUCCUUCUCGUCAGUACAGUACUCAG .........(((...........((....))(((((((((((...((((....))))...)))))........)))))).......))). ( -19.30) >DroYak_CAF1 36120 87 - 1 --UCCCGGAUUAAUA-AUUCUUACCUUCGGGACUGAUGGAUGCCAUGCUGCGCAGCAACUCCUUUUCCUUCUCGUCAGUACAAUACUCGG --..((((.......-.......((....))(((((((((.....((((....))))............)).))))))).......)))) ( -17.93) >DroPer_CAF1 83776 68 - 1 ----------------------GCCCUCCGGACUAAUGGAGGCCAUGCUGCGCAGCAGCUCCUUUUCCUUCUCAUCUGUGCAGUAUUCCG ----------------------(.((((((......)))))).)(((((((((((....................))))))))))).... ( -22.75) >consensus __AGUCUUAUGAAUA_UUUCUUACCUUCGGGACUGAUGGAGGCCAUGCUGCGCAGCAACUCCUUCUCCUUCUCGUCAGUACAGUACUCAG .......................((....))(((((((((((...((((....))))...))))........)))))))........... (-13.69 = -14.30 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:44 2006