Locus 234

Sequence ID 2L_DroMel_CAF1
Location 676,004 – 676,110
Length 106
Max. P 0.709301
window374

overview

Window 4

Location 676,004 – 676,110
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 94.81
Mean single sequence MFE -31.85
Consensus MFE -27.51
Energy contribution -28.45
Covariance contribution 0.94
Combinations/Pair 1.08
Mean z-score -1.76
Structure conservation index 0.86
SVM decision value 0.37
SVM RNA-class probability 0.709301
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 676004 106 + 22407834
GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG
.(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) ( -34.20)
>DroSec_CAF1 64231 106 + 1
GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG
.(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) ( -34.20)
>DroSim_CAF1 68998 106 + 1
GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG
.(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) ( -34.20)
>DroYak_CAF1 69239 103 + 1
---GCAGGGUGUUCAAUGCUACCAGUAAGCUUUUCGAUUUUAUGGCUUCGAUUCGAUUUGGAAGCCUGAAAGAGUUAUUAAAAUGAGUCGUGAGUGGGUUAUGCUG
---((..(((((.....)).))).((((.((.((((.(((((.((((((.(.......).)))))))))))((.((((....)))).)).)))).)).)))))).. ( -24.80)
>consensus
GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG
.(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) (-27.51 = -28.45 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:44 2006