| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,337,288 – 6,337,388 |
| Length | 100 |
| Max. P | 0.991968 |
| Location | 6,337,288 – 6,337,388 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 89.70 |
| Mean single sequence MFE | -36.56 |
| Consensus MFE | -33.48 |
| Energy contribution | -34.28 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.92 |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.991968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6337288 100 - 22407834 UGCAUAUUUGCGCGUGCGACGGGCAGGGCCAAAUUGUUGUUGUGCGGCGAAUUUAGAGUGCUUGGAGCGACUUAGGCCGAUGUUUGAAGCACGUUUUCAC .(((....)))((((((..((((((.((((...((((((.....)))))).....((((((.....)).)))).))))..))))))..))))))...... ( -36.30) >DroSec_CAF1 28391 100 - 1 UGCAUAUUUGCGCGUGCGACGGGCAGGGCCAUGUUGUUGUUGUGCGGCGAAUUGACAGUGCUUGGAGCGGCUUAGGCCGAUGCUUGGAGCACGUUUUCAC .(((....)))((((((..((((((.((((..((((((.(.(..(............)..)..).))))))...))))..))))))..))))))...... ( -39.50) >DroSim_CAF1 30344 100 - 1 UGCAUAUUUGCGCGUGCGACGGGCAGGGCCAAGUUGUUGUUGUGCGGCGAAUUGAGAGUGCUUGGAGCGGCUUAGGCCGAUGUUUGGAGCACGUUUUCAC .(((....)))((((((..((((((.((((((((((((.(.(..(..(.......).)..)..).)))))))).))))..))))))..))))))...... ( -40.30) >DroEre_CAF1 28893 99 - 1 UGCAUAUUUGCGCGUGCGAUGGGCAGGGCCAAGUUGUUGUUGUGCGGCGAAUUCAGAGUGCUUGGAGCGGCUUAGGC-GAAGUUUGGAGCACGUUUUCAC .(((....)))((((((..(..((...(((((((((((.(.(..(..(.......).)..)..).)))))))).)))-...))..)..))))))...... ( -32.20) >DroYak_CAF1 28390 88 - 1 UGCAUAUUUGCGCGUGCGACGGGCAGGGCCAAGUUGUUGUUG------------AUGGAGCUUGGAGCGGCUUAGGCUGAUGUUUGGAGCACGUUUUCAC .(((....)))((((((..((((((.((((((((((((.(..------------(......)..))))))))).))))..))))))..))))))...... ( -34.50) >consensus UGCAUAUUUGCGCGUGCGACGGGCAGGGCCAAGUUGUUGUUGUGCGGCGAAUUGAGAGUGCUUGGAGCGGCUUAGGCCGAUGUUUGGAGCACGUUUUCAC .(((....)))((((((..((((((.((((((((((((.(.((((............))))..).)))))))).))))..))))))..))))))...... (-33.48 = -34.28 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:39 2006