| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,329,283 – 6,329,390 |
| Length | 107 |
| Max. P | 0.845584 |
| Location | 6,329,283 – 6,329,390 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 73.53 |
| Mean single sequence MFE | -48.02 |
| Consensus MFE | -27.12 |
| Energy contribution | -26.10 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6329283 107 - 22407834 ---AGGC------GACGGUGUGCUGAAACCAUGUGCCGCAUGCAUGUGAUGCAGUGGUGGAAUCACUCCGGCCAUU---GUGGAUCCGUGACGCGGCACGAAUGGCUGGUGCGGCCGAA ---....------..(((((..(((...(((((((((((...((((.((((((((((((((.....))).))))))---))..)))))))..)))))))..)))).)))..).)))).. ( -46.30) >DroVir_CAF1 38659 110 - 1 ACUGACA------GCUGGCGUGCUGAAGCCAUGCGCUGCAUGCAAAUGAUGCAGCGGCGGGAUGACGCCAGGCAGC---GCGGAACUGUGACGCGGCACGAAUGGCUGAUGCGGGCGUA .(((.((------(((..(((((((..((..((((((((.((((.....))))..((((......))))..)))))---))).....))....)))))))...)))))...)))..... ( -49.10) >DroGri_CAF1 12754 107 - 1 ---GGCG------GCUGGUGUGCUAAAUCCAUGGGCGGCAUGUAGAUGAUGUAGCGGCGGAAUGACGCCGGGCAGG---GCCGAAUUGUGGCGCGGCACAAAUGGCUGAUGUGGCCGUA ---.(((------(((..((((((....(((..(.((((..........(((..(((((......))))).)))..---))))..)..)))...))))))....((....)))))))). ( -40.40) >DroWil_CAF1 61475 111 - 1 ---UUGC-----UGCUGGCGUGCUGAAACCAUGAGCCGCAUGCAUAUGAUGCAGAGGCGGUAUGACGCCUGGCAUGCCAGUGGAGCCAUGUCGUGGCAUGAAUGGCUGAUGUGGUCGUA ---...(-----..((((((((((.....(((..(((((.(((((...)))))...))))))))......))))))))))..).(((((((((.(.((....)).)))))))))).... ( -46.80) >DroMoj_CAF1 45330 110 - 1 AGCGCCG------GCCGGCGUGCUGAAGCCAUGCGCCGCAUGUAAAUGAUGCAGCGGCGGCAGGACGCCGGGCAGC---GCUGAGCUGUGCCGCGGCACGAACGGCUGAUGUGGUCGAA (((((.(------.(((((((.(((..(((.((((...(((....))).))))..)))..))).))))))).).))---)))....(((((....)))))..(((((.....))))).. ( -56.80) >DroAna_CAF1 21048 113 - 1 ---GGGCACUCCUGCCGGCGUACUAAAGCCGUGGGCCGCGUGCAUGUGGUGGAGUGGGGGGAUGACGCCGGGUAGG---GCUGAGCCGUGGCGCGGCACGAACGGCUGGUGGGGGCGAA ---...(.((((..(((.....)...((((((..(((((((..((.(((((..((......))..))))).))..(---((...)))...)))))))....))))))))..)))).).. ( -48.70) >consensus ___GGCC______GCCGGCGUGCUGAAGCCAUGCGCCGCAUGCAUAUGAUGCAGCGGCGGAAUGACGCCGGGCAGG___GCGGAGCCGUGACGCGGCACGAAUGGCUGAUGUGGCCGAA .............((((.(((((((....((((..((((.((((.....)))).(((((......))))).........))))...))))...)))))))..))))............. (-27.12 = -26.10 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:29 2006