| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,321,723 – 6,321,832 |
| Length | 109 |
| Max. P | 0.625818 |
| Location | 6,321,723 – 6,321,832 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.21 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -17.55 |
| Energy contribution | -17.50 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6321723 109 - 22407834 UCCCUGGCGAAAGUCAAUAUUUCCCACAGGGCAACCGCAAAGGACCACACAUCCGAUUUCGUUGUGAACUUGCCCUGCAAAGAGGUAUU--AUCAAACCAUGUUAGAUAAC ....((((....)))).((((((...((((((((((.....))....((((..((....)).))))...))))))))....))))))((--(((.(((...))).))))). ( -30.90) >DroSec_CAF1 12847 108 - 1 UCCCUGGCGAAAGUCAAUAUUUCCCAAAGGGCAACUGCGAAGGACCACACAUCCGAUUUCGUUGUGAACUUGCCCUGCAAAGAGGUAAG--AUCAAACAAUGUUU-AAGAC ....((((....)))).((((((....(((((((...(....)....((((..((....)).))))...))))))).....))))))..--..............-..... ( -25.20) >DroSim_CAF1 13057 108 - 1 UCCCUGGCGAAAGUCAAUAUUUCCCACAGGGCAACUGCGAAGGACCACACAUCCGAUUUCGUUGUAAACUUGCCCUGCAAAGAGGUAUU--AUCAAACAAUGUUG-AAAAC .....(((....)))((((((((...(((((((((.((((((((.......)))...))))).)).....)))))))....))))))))--.((((......)))-).... ( -29.00) >DroEre_CAF1 13029 93 - 1 UCUCUGGCGAAAGUCAAUAUUUCCCACAGGGCAACUGCGAAGGACCACACAUCCGAUUUCGUUGUGAACUUGCCCUGCAAAUAAGUU-----------------U-AAAAC ....((((....))))..........((((((((...(....)....((((..((....)).))))...))))))))..........-----------------.-..... ( -23.90) >DroYak_CAF1 12983 110 - 1 UCCCUGGCGAAAGUCAAUAUCUCCCACAGGGCAACUGCGAAGGACCACACAUCCGACUUGGUUGUGAACUUGCCCUGCAAAAAAGUUGUAAAGCCAAGAAUGUUA-AAAAC ....((((......((((........((((((((...(....)....((((.((.....)).))))...)))))))).......))))....)))).........-..... ( -26.06) >DroAna_CAF1 8766 100 - 1 UCCCUGGCGAAUGUCAAUAUUUCCCAUAAGGUAACGGCAAAGGACCAAACAUCUGACUUCGUAGUGAAUUUAUCCUUAAAAAAAG-----------ACAAGUUUGGAUUAU (((...(((((.((((.......((....))....(((....).)).......)))))))))...((((((.((.((....)).)-----------).))))))))).... ( -13.30) >consensus UCCCUGGCGAAAGUCAAUAUUUCCCACAGGGCAACUGCGAAGGACCACACAUCCGAUUUCGUUGUGAACUUGCCCUGCAAAGAAGUA_U__AUCAAACAAUGUUA_AAAAC ....((((....))))..........((((((((.(((((.(((.......))).......)))))...)))))))).................................. (-17.55 = -17.50 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:20 2006