Locus 2327

Sequence ID 2L_DroMel_CAF1
Location 6,315,005 – 6,315,121
Length 116
Max. P 0.992794
window3750

overview

Window 0

Location 6,315,005 – 6,315,121
Length 116
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 94.37
Mean single sequence MFE -29.78
Consensus MFE -24.98
Energy contribution -24.74
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -2.33
Structure conservation index 0.84
SVM decision value 2.35
SVM RNA-class probability 0.992794
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6315005 116 + 22407834
CGCUAAAAAUUG-UGCAAGAAGACUUUUAUGCACCAGGCGGCCAA-AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA
.........((.-(((((((((((((((.(((.....)))...))-))))))))...(((((..((((((((((((((....)))))))))))).)).....)))))..))))).)). ( -30.40)
>DroSec_CAF1 6240 117 + 1
CGCUAAAAAUUGUUGCAAGAAGACUUUUAUGCACCAGGCGGCCAA-AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA
............((((((((((((((((.(((.....)))...))-))))))))...(((((..((((((((((((((....)))))))))))).)).....)))))..))))))... ( -29.60)
>DroSim_CAF1 6149 117 + 1
CACUAAAAAUUGUUGCAAGAAGACUUUUAUGCACCAGGCGGCCAA-AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA
............((((((((((((((((.(((.....)))...))-))))))))...(((((..((((((((((((((....)))))))))))).)).....)))))..))))))... ( -29.60)
>DroEre_CAF1 6250 114 + 1
CGC-GAAAAUUG-UGCAAGAAGAUUUUCAUGCACCAGGCGGCCAAAAAGUUUUCAUGGUU--UCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA
...-.....((.-(((((......(((((.((((((((.(((((...........)))))--))))))))((((((((....))))))))...........)))))...))))).)). ( -28.70)
>DroYak_CAF1 6280 112 + 1
CGCUGGAAAUUG-UGCAA---GAUUUUCAUGCACCAGGCGGCCAAAAAGUUUUCAUGGUU--UCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA
.........((.-(((((---...(((((.((((((((.(((((...........)))))--))))))))((((((((....))))))))...........)))))...))))).)). ( -30.60)
>consensus
CGCUAAAAAUUG_UGCAAGAAGACUUUUAUGCACCAGGCGGCCAA_AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA
.............(((((......(((((.((((((((..((((...........))))...))))))))((((((((....))))))))...........)))))...))))).... (-24.98 = -24.74 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:20 2006