| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,309,236 – 6,309,327 |
| Length | 91 |
| Max. P | 0.849365 |
| Location | 6,309,236 – 6,309,327 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 81.08 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -18.81 |
| Energy contribution | -21.12 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6309236 91 + 22407834 -AUCUCCAC-GCCACUUAGACCGUCUCGAGUGCGCUGAGUGAAUUUUUCAGAUACUGUUAC---AGUGGCAGUAUCGGAUAUUUUCUCUGCCGUUC -........-((.((((((.....)).))))))((.(((.((((...((.(((((((((..---...))))))))).)).)))).))).))..... ( -24.30) >DroSec_CAF1 519 91 + 1 -AUCUCGAC-GCCACUUAGACCGUCUCGAGUGCGCUGAGUGAAUUUUUCAGAUACUGUUAC---AGUGGCAGUAUCGAAUAUUUUCUCUGCCGUUC -.....(((-(.(((((((.....)).))))).((.(((.((((..(((.(((((((((..---...)))))))))))).)))).))).)))))). ( -25.20) >DroSim_CAF1 374 91 + 1 -AUCUCGAC-GCCACUUAGACCGUCUCGAGUGCGCUGAGUGAAUUUUUCAGAUACUGUUAC---AGUGGCAGUAUCGAAUAUUUUCUCUGCCGUUC -.....(((-(.(((((((.....)).))))).((.(((.((((..(((.(((((((((..---...)))))))))))).)))).))).)))))). ( -25.20) >DroEre_CAF1 371 91 + 1 -AUCCCGAC-GCCACUUAGACCGUCUCGAGUGCGCAGAGUGAAUUUUUCAGAUACUGUUAC---AGUGGCAGUAUCGGAUAUUUUCUCUGCCGUUC -.....(((-(.(((((((.....)).))))).((((((.((((...((.(((((((((..---...))))))))).)).)))).)))))))))). ( -29.90) >DroYak_CAF1 377 94 + 1 -AUCCCGAU-GCCACUUAGACCGUCUCGAGUGCGCAGAGUGAAUUUUUCAGAUACUGUUACAACAGUGGCAGUAUCGAAUAUUCUCUCUGCCGUUG -....((((-(.(((((((.....)).))))).((((((.((((..(((.(((((((((((....)))))))))))))).)))).))))))))))) ( -36.50) >DroMoj_CAF1 469 73 + 1 UAACUCAACUGCCUCUUAGACUGUCUCGAGUGUGCGG--CAAA-UUUCAAGUUG--AAAAC---AGUAGCUGA----AAAAUU-----------UG ........(((((.(((((.....)).))).).))))--((((-(((..(((((--.....---..)))))..----.)))))-----------)) ( -11.80) >consensus _AUCUCGAC_GCCACUUAGACCGUCUCGAGUGCGCUGAGUGAAUUUUUCAGAUACUGUUAC___AGUGGCAGUAUCGAAUAUUUUCUCUGCCGUUC ..........(((((((((.....)).))))).)).(((.((((..(((.(((((((((((....)))))))))))))).)))).)))........ (-18.81 = -21.12 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:17 2006