Locus 2324

Sequence ID 2L_DroMel_CAF1
Location 6,304,475 – 6,304,571
Length 96
Max. P 0.558090
window3746

overview

Window 6

Location 6,304,475 – 6,304,571
Length 96
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.05
Mean single sequence MFE -24.98
Consensus MFE -22.62
Energy contribution -22.62
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.13
Structure conservation index 0.91
SVM decision value 0.05
SVM RNA-class probability 0.558090
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6304475 96 - 22407834
GGCUAUUGCCUGCCGGUCCU-------CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU
(((........))).((...-------((.(((((((((((.....)))......(((((((....))))))).........)))))))).))...))..... ( -23.80)
>DroSec_CAF1 140439 96 - 1
GGCUAUUGCCUGCCGGUCCU-------CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU
(((........))).((...-------((.(((((((((((.....)))......(((((((....))))))).........)))))))).))...))..... ( -23.80)
>DroSim_CAF1 162208 96 - 1
GGCUAUUGCCUGCCGGUUCU-------CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU
(((........))).((...-------((.(((((((((((.....)))......(((((((....))))))).........)))))))).))...))..... ( -23.80)
>DroEre_CAF1 140478 103 - 1
GGCUAUUGCCUGGCGGUCCUCCGUUGCCGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGC
(((....))).(((((....)))))((.(.(((((((((((.....)))......(((((((....))))))).........)))))))).)))......... ( -28.40)
>DroYak_CAF1 156151 103 - 1
GGCUAUUGCCUGUCGGUCCUUCGUUGCCGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGC
(((....)))............(((((.(.(((((((((((.....)))......(((((((....))))))).........)))))))).)))).))..... ( -25.10)
>consensus
GGCUAUUGCCUGCCGGUCCU_______CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU
(((....))).................((.(((((((((((.....)))......(((((((....))))))).........)))))))).)).......... (-22.62 = -22.62 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:16 2006