| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 672,427 – 672,534 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 672,427 – 672,534 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 92.16 |
| Mean single sequence MFE | -24.44 |
| Consensus MFE | -20.10 |
| Energy contribution | -20.14 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 672427 107 + 22407834 CUACGGGGUUAACAUCAUUAUUUCACCUUCUAAUCAAAAUCAGCAACAUUGUUGCAGCGUGCAUACAGGGAAAAUCUUUGCACAGCACGAAAAAUAGGUGAGA---GUGC ....................((((((((.....((.......(((((...))))).(((((((...(((.....))).))))).))..)).....))))))))---.... ( -25.20) >DroSec_CAF1 60729 110 + 1 CUACGGGGUUAACAUCAUUAUUUCACCUUCUAAUCAAAAUCAGCAACAUUGUUGCAGCGUGCAUACAGGGAAAAUCUUUGCACAGCACGAAAAAUAGGUGAGAUAGGUAC .................(((((((((((.....((.......(((((...))))).(((((((...(((.....))).))))).))..)).....))))))))))).... ( -28.20) >DroSim_CAF1 65399 110 + 1 CUACGGGGUUAACAUCAUUAUUUCACCUUCUAAUCAAAAUCAGCAACAUUGUUGCAGCGUGCAUACAGGGAAAAUCUUUGCACAGUACGAAAAAUUGGUAAGAUAGGUUU ....(..((..........))..)(((((((.(((((.....(((((...)))))..(((((...(((((.....)))))....))))).....))))).))).)))).. ( -23.80) >DroEre_CAF1 69688 107 + 1 CUACGGGGUUAACAUCAUUAUUUCACCUUCUAAUCAAAAUCUGCAACAUUGUUGUAGUGUGCAUACAGGGAAAAUCUUUGCACAGCACGAAAAAUAGGUGAGAAAG---A ....................((((((((.....((.....(((((((...))))))).((((...(((((.....)))))....)))))).....))))))))...---. ( -25.50) >DroYak_CAF1 65523 106 + 1 CUACGGGGUUAACAUCAUUAUUUCACCUUCUAAUCAAAAUCUGCAACAUUGUUGCAGUGUGCAUAC-GGGAAAAUCUUUGCACCGCACGAAAAAUAGAUGAGAGAG---A ............(((((((.((((................(((((((...))))))).(((((...-(((.....)))))))).....))))))).))))......---. ( -19.50) >consensus CUACGGGGUUAACAUCAUUAUUUCACCUUCUAAUCAAAAUCAGCAACAUUGUUGCAGCGUGCAUACAGGGAAAAUCUUUGCACAGCACGAAAAAUAGGUGAGAUAGGU_A ....................(((((((...............(((((...)))))..(((((...(((((.....)))))....))))).......)))))))....... (-20.10 = -20.14 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:40 2006