Locus 2316

Sequence ID	2L_DroMel_CAF1
Location	6,286,221 – 6,286,331
Length	110
Max. P	0.990259

overview

Window 7

Location	6,286,221 – 6,286,331
Length	110
Sequences	5
Columns	110
Reading direction	forward
Mean pairwise identity	96.64
Mean single sequence MFE	-25.49
Consensus MFE	-21.32
Energy contribution	-22.32
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-2.37
Structure conservation index	0.84
SVM decision value	1.93
SVM RNA-class probability	0.982998
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6286221 110 + 22407834
UGGGGCUCUCAAAAGUUCUCCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACGUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC
(((..(((.((((((((....(((((......)))))....))))))))....)))..))).....................((((((((...))))))))......... ( -25.70)
>DroSec_CAF1 122482 110 + 1
UGGGGCUCUCAAAAGUCCUCCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGAACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACUGGAAAAACCUAUCCAAC
(((..(((.(((((((.....(((((......))))).....)))))))....)))..))).....................((((((((...))))))))......... ( -25.60)
>DroSim_CAF1 137201 110 + 1
UGGGGCUCUCAAAAGUUCUGCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC
(((..(((.((((((((.((.(((((......))))).)).))))))))....)))..))).....................((((((((...))))))))......... ( -28.70)
>DroEre_CAF1 122137 110 + 1
UGGGGCUCUCAAAAGUUCUCCCGGUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGUACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC
(((..(((.((((((((.....((.....)).((....)).))))))))....)))..))).....................((((((((...))))))))......... ( -23.20)
>DroYak_CAF1 135393 110 + 1
UGGGGCACUCAAAAGUUCUCCUGGUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC
(((((((((.....((((((..((((......((....)).......))))..))))))........)).))))........((((((((...))))))))....))).. ( -24.24)
>consensus
UGGGGCUCUCAAAAGUUCUCCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC
(((..(((.((((((((....(((((......)))))....))))))))....)))..))).....................((((((((...))))))))......... (-21.32 = -22.32 +   1.00)

alignment

secondary structure

dotplot

Window 8

Location	6,286,221 – 6,286,331
Length	110
Sequences	5
Columns	110
Reading direction	reverse
Mean pairwise identity	96.64
Mean single sequence MFE	-30.32
Consensus MFE	-28.78
Energy contribution	-29.02
Covariance contribution	0.24
Combinations/Pair	1.03
Mean z-score	-1.71
Structure conservation index	0.95
SVM decision value	2.20
SVM RNA-class probability	0.990259
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6286221 110 - 22407834
GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUACGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGGAGAACUUUUGAGAGCCCCA
.((((((..((((((((...))))))))...))))))(((((..((.((((.(......).)))).))...)))))...((((....(((((....)))))....)))). ( -29.80)
>DroSec_CAF1 122482 110 - 1
GUUGGAUAGGUUUUUCCAGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUUCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGGAGGACUUUUGAGAGCCCCA
..(((....((((((((...)))))))).......(((((.....)))))((((((((((.....((((.(((((((....)).)))))....))))))))))))))))) ( -31.10)
>DroSim_CAF1 137201 110 - 1
GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGCAGAACUUUUGAGAGCCCCA
.........((((((((...)))))))).......(((((.....)))))((..(((....((((((((.((((((..........)))))).)))))))).)))..)). ( -30.30)
>DroEre_CAF1 122137 110 - 1
GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUACUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUACCGGGAGAACUUUUGAGAGCCCCA
.((((....((((((((...))))))))........((((((((.(((((........))))).))))..)))).))))((((....(((((....)))))....)))). ( -28.50)
>DroYak_CAF1 135393 110 - 1
GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUACCAGGAGAACUUUUGAGUGCCCCA
.((((....((((((((...))))))))........((((((((.(((((........))))).))))..)))).))))((((.((((((((....))))).))))))). ( -31.90)
>consensus
GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGGAGAACUUUUGAGAGCCCCA
.((((....((((((((...))))))))........((((((((.(((((........))))).))))..)))).))))((((....(((((....)))))....)))). (-28.78 = -29.02 +   0.24)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:58 2006