Locus 2311

Sequence ID 2L_DroMel_CAF1
Location 6,271,442 – 6,271,557
Length 115
Max. P 0.537940
window3719

overview

Window 9

Location 6,271,442 – 6,271,557
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 93.83
Mean single sequence MFE -40.10
Consensus MFE -33.74
Energy contribution -34.74
Covariance contribution 1.00
Combinations/Pair 1.06
Mean z-score -1.27
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.537940
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6271442 115 + 22407834
GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACUGCGACUGCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA
.........((((((...))))))......(((((....((.((((.((((((.(((....)))....((((((..(((....)))))))))..)))))))))).))..))))). ( -40.30)
>DroSec_CAF1 107512 109 + 1
GAGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACU------GCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA
.((((....((((((...)))))).....)))).......(((((...((((((.------((((...((((((..(((....)))))))))..)))).)).))))...))))). ( -40.70)
>DroSim_CAF1 122251 115 + 1
GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACUGCGACUGCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA
.........((((((...))))))......(((((....((.((((.((((((.(((....)))....((((((..(((....)))))))))..)))))))))).))..))))). ( -40.30)
>DroEre_CAF1 107002 115 + 1
GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGACCACGACGGCGACUCCGACUAGGAGCACUGCACCACUGCCGCUCCACUCGCUGUGUGCUCAAGUGGUA
((((.....((((((...)))))).........))))...(((((((.(((.(((((((.........(((((...(((....))).)))))..)))))))))).))..))))). ( -38.94)
>DroYak_CAF1 120325 115 + 1
GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGACUACGACUGCGACUGCGACUAGGGGCAGUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA
((((.....((((((...)))))).........)))).........(((((....(((((.((((...((((((((........))))))))..)))).)).)))....))))). ( -40.24)
>consensus
GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACUGCGACUGCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA
.........((((((...))))))......(((((....((.(((.(((((((...((....))....((((((..(((....)))))))))..)))))))))).))..))))). (-33.74 = -34.74 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:50 2006