Locus 231

Sequence ID 2L_DroMel_CAF1
Location 671,105 – 671,217
Length 112
Max. P 0.561163
window369

overview

Window 9

Location 671,105 – 671,217
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 94.64
Mean single sequence MFE -32.76
Consensus MFE -28.66
Energy contribution -28.90
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.21
Structure conservation index 0.87
SVM decision value 0.05
SVM RNA-class probability 0.561163
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 671105 112 - 22407834
UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGCUAUGGGACAGAACCAGAAAACUGGCCAAUGCUG
..(((.((((..(.((((((..(((...(((((..((((........)))).))))).)))...((...)))))))).)..)))).)))..((((....))))......... ( -36.00)
>DroSec_CAF1 59443 112 - 1
UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGUCUAUGGGACAGAACCAGAAAACUGGCCAAUGCUG
..(((.((((..((((((((..(((...(((((..((((........)))).))))).)))...((...))))))))))..)))).)))..((((....))))......... ( -37.90)
>DroSim_CAF1 64114 104 - 1
UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGCUAUGGGACAGAACCAGAAA--------AUGCUG
..(((.((((..(.((((((..(((...(((((..((((........)))).))))).)))...((...)))))))).)..)))).)))...(((...--------...))) ( -32.50)
>DroEre_CAF1 68401 112 - 1
UCUUGACUCGCGGGCCCUGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGUUAUGGGACAGAAACAGAAAACUGGCAAAUGCUG
((.((((((.(((.((((.((.(((...(((((..((((........)))).))))).))).....))))))))))))))).))........(((....)))((....)).. ( -28.30)
>DroYak_CAF1 64245 112 - 1
UCUUGACUCGCGGGCCCUGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAAGGCUGGGGCUAUGGGACAGAAACAGAAAACUGGCAAAUGCUG
..(((.((((..((((((....(((...(((((..((((........)))).))))).)))((.((....)))))))))).)))).)))...(((....)))((....)).. ( -29.10)
>consensus
UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGCUAUGGGACAGAACCAGAAAACUGGCAAAUGCUG
..(((.((((..(.((((((..(((...(((((..((((........)))).))))).)))...(.....))))))).)..)))).)))....................... (-28.66 = -28.90 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:39 2006