| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,258,933 – 6,259,024 |
| Length | 91 |
| Max. P | 0.562394 |
| Location | 6,258,933 – 6,259,024 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 91.58 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -16.13 |
| Energy contribution | -16.00 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6258933 91 + 22407834 UUCAGUAAGCGGCAGAUACCGAUUUCGAUUUCGAUUCCGAAUAGAUUUAACUGCCUACACAAUGUGUAACAAGUUUAACGAAUUCAAACUA (((..((((((((((....((....))..((((....)))).........)))))(((((...)))))....)))))..)))......... ( -19.00) >DroSec_CAF1 95057 91 + 1 UUCAGUGAGCGGCAGAUACCGAUUUCGAUUUCGAUUCCGAAUAGAUUUAACUGCCUACACAAAGUGUAACAAGUUUAACGAAUUCAAACUA (((..((((((((((....((....))..((((....)))).........)))))(((((...)))))....)))))..)))......... ( -19.10) >DroSim_CAF1 109757 91 + 1 UUCAGUGAGCGGCAGAUACCGAUUUCGAUUUCGAUUCCGAAUAGAUUUAACUGCCUACACAAAGUGUAACAAGUUUAACGAAUUCAAACUA (((..((((((((((....((....))..((((....)))).........)))))(((((...)))))....)))))..)))......... ( -19.10) >DroEre_CAF1 94446 85 + 1 UUUAGUGAGCGGCUGAUGCCGAUUUCGAUU------UCGAAUAGAUUUGGCUGCCUACACAAUGUGUAACUAGUUUAACGAAUUCAAACUA (((..((((((((....(((((.((((...------.)))).....))))).)))(((((...)))))....)))))..)))......... ( -19.90) >consensus UUCAGUGAGCGGCAGAUACCGAUUUCGAUUUCGAUUCCGAAUAGAUUUAACUGCCUACACAAAGUGUAACAAGUUUAACGAAUUCAAACUA (((..((((((((((........((((..........)))).........)))))(((((...)))))....)))))..)))......... (-16.13 = -16.00 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:38 2006