Locus 2306

Sequence ID 2L_DroMel_CAF1
Location 6,253,596 – 6,253,705
Length 109
Max. P 0.619740
window3705

overview

Window 5

Location 6,253,596 – 6,253,705
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 94.05
Mean single sequence MFE -25.10
Consensus MFE -21.50
Energy contribution -22.18
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.29
Structure conservation index 0.86
SVM decision value 0.18
SVM RNA-class probability 0.619740
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6253596 109 - 22407834
UUAAGUUGGAGCACUCAAAUUUGAUUGGCCGCCGCCAACUUUUCCC-CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU
..........((((..(((((((...(((((..(((((..(((...-....)))..)))))))))).((((((((........))))))))))))).))..))))..... ( -27.90)
>DroSec_CAF1 89760 106 - 1
UUAAGUUGGAGCACUCAAAUUUGAUUGGCC---GCCAACUUUUCCC-CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU
..........((((..(((((((...((((---(((((..(((...-....)))..)))).))))).((((((((........))))))))))))).))..))))..... ( -26.90)
>DroSim_CAF1 104444 106 - 1
UUAAGUUGGAGCACUCAAAUUUGAUUGGCC---GCCAACUUUUCCC-CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU
..........((((..(((((((...((((---(((((..(((...-....)))..)))).))))).((((((((........))))))))))))).))..))))..... ( -26.90)
>DroEre_CAF1 89105 107 - 1
UUAAGUUGGAGCUUUCAAAUUUGAUUCGCC---GCCAACUUUCACCCCCUCAAAUUUUGGCUGGUCUUUAAUGGCAUCAUAAAGCUGUUGGCAAAUAUUAGGUGCAUAUU
..(((((((.((..(((....)))...)).---.))))))).((((.((.........))...(((...((((((........)))))))))........))))...... ( -19.50)
>DroYak_CAF1 102120 106 - 1
ACAAGUUGGAGCUCUCAAAUUUGAUUGGCC---GCCAACUUUUACC-CCUCAAAUUUUGGCCGGUCUUUAAUGGGCUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU
...((((.((((((......((((..((((---(((((..(((...-....)))..)))).))))).)))).))))))....))))....(((.........)))..... ( -24.30)
>consensus
UUAAGUUGGAGCACUCAAAUUUGAUUGGCC___GCCAACUUUUCCC_CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU
..........((((..(((((((...((((...(((((..(((........)))..))))).)))).((((((((........))))))))))))).))..))))..... (-21.50 = -22.18 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:37 2006