Locus 2301

Sequence ID 2L_DroMel_CAF1
Location 6,227,259 – 6,227,368
Length 109
Max. P 0.983994
window3695

overview

Window 5

Location 6,227,259 – 6,227,368
Length 109
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 92.97
Mean single sequence MFE -32.26
Consensus MFE -26.68
Energy contribution -26.96
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -2.17
Structure conservation index 0.83
SVM decision value 1.96
SVM RNA-class probability 0.983994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6227259 109 + 22407834
CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGA--GGUCCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU
..........((....(((((..(((((...)))))..--))))).....))((((((...-----...)))))).........(((((((((((((.....))))).)))))))) ( -32.00)
>DroSec_CAF1 63756 111 + 1
CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGAGAGGUCCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU
......((((((.(.(((((.(((.(((.((((.......))))))).))).)).....))-----).).))))))........(((((((((((((.....))))).)))))))) ( -30.90)
>DroSim_CAF1 76942 111 + 1
CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGAGAGGUCCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU
......((((((.(.(((((.(((.(((.((((.......))))))).))).)).....))-----).).))))))........(((((((((((((.....))))).)))))))) ( -30.90)
>DroEre_CAF1 60870 106 + 1
CUUUCACG---CUUCUGGGCCCAGUUGGUGGCCAACGC--GGUGCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU
....((((---......(((((.....).))))...((--(((((.....)))))))....-----.)))).(....)......(((((((((((((.....))))).)))))))) ( -31.90)
>DroYak_CAF1 75411 114 + 1
CUUUCAGGCUGCUCCUGGGCUCAGUUGGUGGCCAACGC--GGUGCUAUCUGCGCUGCAACUACUAUACGUGCAGCUACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU
......((((((.(.(((.....(((((...)))))((--(((((.....))))))).....)))...).))))))........(((((((((((((.....))))).)))))))) ( -35.60)
>consensus
CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGA__GGUCCUAUCUGCGCUGCAACU_____ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU
..........((....(((((..(((((...)))))....))))).....))((((((.(........))))))).........(((((((((((((.....))))).)))))))) (-26.68 = -26.96 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:28 2006