Locus 23

Sequence ID 2L_DroMel_CAF1
Location 86,474 – 86,593
Length 119
Max. P 0.804799
window35

overview

Window 5

Location 86,474 – 86,593
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.55
Mean single sequence MFE -33.49
Consensus MFE -21.93
Energy contribution -22.40
Covariance contribution 0.47
Combinations/Pair 1.08
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value 0.63
SVM RNA-class probability 0.804799
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 86474 119 + 22407834
ACA-AACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCGUCCCAAAUUCGCCAUUGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAGACGAAAGUUGGAGUACGCUGGCGACAC
...-..........(((((((((((((.((((((...))))))........((((..(((.......))).)))).)))))))((.......(((....))).......))))))))... ( -33.64)
>DroPse_CAF1 78429 119 + 1
AGU-CACACACAAAUUGCCAAUAUGUCUGGCGACGUCGUCGUCCUCAAUUCACUAGAGCGGGCAAAGUGCCUGUUUGACAUAUGCGUCACAGAACCCAGGCAGACAUACGGCGGCGACAA
.((-(.........((((((.......)))))).(((((((((((...(((....((((((((.....))))))))(((......)))...)))...))).......))))))))))).. ( -38.51)
>DroEre_CAF1 66003 119 + 1
ACA-AACAGACAAAUUGCCAAUAUGUCUGGCGACAUUGUCGUCCCAAAUUCGCCAUUGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAAACGAAAGUUGGAGUACGCUGGCGACAC
...-..........(((((((((((((((((((..(((......)))..))))))....((.(((.....))).)))))))))((.......(((....))).......))))))))... ( -34.64)
>DroYak_CAF1 59085 119 + 1
ACA-AACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCGUCCCAAAUUCGCCAUUGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAAACGAAAGUUGGAGUACGCUGGCGACAC
...-..........(((((((((((((.((((((...))))))........((((..(((.......))).)))).)))))))((.......(((....))).......))))))))... ( -33.24)
>DroAna_CAF1 68977 105 + 1
GCAGAACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCAUCCCCAAUUCAUCCCAGAAGCCA-----CUU----GACAUAUGCAUCCCAUCCCC------GAGCUACAAUGGCGACAA
..............((((((((((((((((((((...)))........(((......)))))))-----...----)))))))((.((........------)))).....))))))... ( -22.40)
>DroPer_CAF1 79431 119 + 1
AGU-CACACACAAAUUGCCAAUAUGUCUGGCGACGUCGUCGUCCUCAAUUCACUAGAGCGGGCAAAGUGCCUGUUUGACAUAUGCGUCACAGAACCCAGGCAGACAUACGGCGGCGACAA
.((-(.........((((((.......)))))).(((((((((((...(((....((((((((.....))))))))(((......)))...)))...))).......))))))))))).. ( -38.51)
>consensus
ACA_AACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCGUCCCAAAUUCACCAUAGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAAACCAAAGUUGAAGUACGCUGGCGACAA
..............(((((.(((((((.((((((...))))))...............(((((.....)))))...)))))))...........(....)............)))))... (-21.93 = -22.40 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:29 2006