Locus 2295

Sequence ID 2L_DroMel_CAF1
Location 6,213,078 – 6,213,175
Length 97
Max. P 0.989498
window3684

overview

Window 4

Location 6,213,078 – 6,213,175
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 81.32
Mean single sequence MFE -16.90
Consensus MFE -15.60
Energy contribution -15.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.92
SVM decision value 2.17
SVM RNA-class probability 0.989498
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6213078 97 - 22407834
CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUUCUGAUCCCUCCCUCAGAUCCCCCCCCCCCCUCUCAAAC
......((.((.(((((.((((((......)))))).))))).)).....))......(((((........)))))..................... ( -19.30)
>DroSec_CAF1 49672 79 - 1
CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUCCUGAUCAC------------------CCCUUUUCUAAC
(((.(((..(((.((........)))))..)))....(((.(((.........))))))))).....------------------............ ( -15.70)
>DroSim_CAF1 61026 78 - 1
CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUCCUGAUCCC------------------CCCU-UUCCACC
(((.(((..(((.((........)))))..)))....(((.(((.........))))))))).....------------------....-....... ( -15.70)
>consensus
CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUCCUGAUCCC__________________CCCUUUUCAAAC
(((...((.((.(((((.((((((......)))))).))))).)).....)).......)))................................... (-15.60 = -15.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:18 2006