Locus 2294

Sequence ID 2L_DroMel_CAF1
Location 6,196,039 – 6,196,138
Length 99
Max. P 0.648665
window3683

overview

Window 3

Location 6,196,039 – 6,196,138
Length 99
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.93
Mean single sequence MFE -22.40
Consensus MFE -15.78
Energy contribution -16.03
Covariance contribution 0.25
Combinations/Pair 1.18
Mean z-score -1.62
Structure conservation index 0.70
SVM decision value 0.24
SVM RNA-class probability 0.648665
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6196039 99 - 22407834
UACUAC---CUCGCCAUUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCUGGCCAUUACUCAUGGGCCAGCUACC
......---...(((....))).........((((((((.-......))))))))(((((..((...))..)))))((((((..........))))))..... ( -21.30)
>DroGri_CAF1 8552 98 - 1
UACAAA---UACGUUUUUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUUGGGGGCCUUAAUGUUUGCCCAUUAUUCAUCGGCU-GUGACU
......---...(((...((((..((....(((((((((.-......)))))))))........((((..........)))).......))..)))-).))). ( -18.60)
>DroEre_CAF1 31877 99 - 1
UACCAC---UUCGGCUCUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCCGGCCAUUACUCAUGGGCCUGCUACC
......---...(((((..(((........(((((((((.-......)))))))))......(((((..........)))))...)))...)))))....... ( -22.70)
>DroWil_CAF1 15470 99 - 1
UACAAA---UACGUUUUUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUUGGGGGCCUUAAUGUUUGGCCAUUAUUCAUGGGCCUGUGACU
......---...(((....(((((((....(((((((((.-......))))))))).........((((.........)))).......)))))))...))). ( -21.70)
>DroYak_CAF1 43699 102 - 1
UACAACUACCUCGGCUCUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCCGGCCAUUACUCAUGGGCCUGCUACC
............(((((..(((........(((((((((.-......)))))))))......(((((..........)))))...)))...)))))....... ( -22.70)
>DroAna_CAF1 4575 100 - 1
UAUUAC---CAUAUUUUUCGGUUUAAAUUUCAAUUAAGCCCGUACAUGCUUGAUUGCAUCGUGGCUGCCCUAAUGUCGGGGCAUCACUCAUGGGCCCCUAACU
......---..........((((((.....(((((((((........)))))))))....((((.((((((......))))))))))...))))))....... ( -27.40)
>consensus
UACAAC___CACGUCUUUCGGUUUAUAUUUCAAUUAAGUU_UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCUGGCCAUUACUCAUGGGCCUGCUACC
...................(((((((....(((((((((........)))))))))......((((((......))..)))).......)))))))....... (-15.78 = -16.03 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:17 2006