Locus 2290

Sequence ID	2L_DroMel_CAF1
Location	6,181,970 – 6,182,060
Length	90
Max. P	0.532279

overview

Window 6

Location	6,181,970 – 6,182,060
Length	90
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	93.10
Mean single sequence MFE	-23.81
Consensus MFE	-19.56
Energy contribution	-20.20
Covariance contribution	0.64
Combinations/Pair	1.04
Mean z-score	-1.32
Structure conservation index	0.82
SVM decision value	-0.00
SVM RNA-class probability	0.532279
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6181970 90 + 22407834
AUACAGAUACAGAUACGGGGGAAAACUGGAGGCAC---AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAGGGGUAUAAAU
((((.......(((.(((((((((..((..(((((---...((((.....)))).....))))).))))))))))))))......)))).... ( -24.72)
>DroSec_CAF1 18274 85 + 1
---CAGAUACAGAUACGGGGGAAAACUGGAGGCAC---AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG--GUAUAAAU
---...((((.(((.(((((((((..((..(((((---...((((.....)))).....))))).))))))))))))))....--)))).... ( -25.10)
>DroSim_CAF1 27753 88 + 1
AUACAGAUACAGAUACGGGGGAAAACUGGAGGCAC---AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG--GUAUAAAU
......((((.(((.(((((((((..((..(((((---...((((.....)))).....))))).))))))))))))))....--)))).... ( -25.10)
>DroEre_CAF1 18063 90 + 1
AUACACAUACAGAUACU-GGGAAAACUGGAGGCACGACGGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG--GUAUAAAU
......((((.(((.(.-.((((((.((..(((((...(..((((.....))))..)..))))).))))))))..))))....--)))).... ( -22.60)
>DroYak_CAF1 29135 87 + 1
AUACACAUACAGAUACU-GGGAAAACUGGAGGCAC---AGAUGCCAAGGCGGCGCACAGGUGCCACAUUUUUUUCGAUUGCAG--GUAUAAAU
......((((......(-(..((((.((..(((((---...((((.....)))).....))))).)).))))..)).......--)))).... ( -21.52)
>consensus
AUACAGAUACAGAUACGGGGGAAAACUGGAGGCAC___AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG__GUAUAAAU
......((((.(((.(((((((((......((((.......)))).....(((((....)))))...))))))))))))......)))).... (-19.56 = -20.20 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:10 2006