| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,181,354 – 6,181,474 |
| Length | 120 |
| Max. P | 0.697646 |
| Location | 6,181,354 – 6,181,474 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.25 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -19.70 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6181354 120 - 22407834 GCCAUCGGAUUUAAUGGUCUAAUUAGACAUUUUAUUAUUUAUUUUUGACAUUGCAUGAAUGGGCUUUGUUUAGAUUUUAAUGAAAACAAAGUUUAAUCAAUGCUGUUUAAAUGGAUCCUU ......(((((((...((((....))))..............(((.((((..((((((.((((((((((((............)))))))))))).)).)))))))).)))))))))).. ( -27.00) >DroSec_CAF1 17661 120 - 1 GCCAUCGGAUUUAAUGGUCAAAUUAGACAUUUUAUUAUUUAUUUGUGACAUUGCAUGAAUGGGCUUUGUUUAGAUUUUAAUGAAAACAAAGUUUAAUCAAUGCUGUUUAAAUGGAUCCUU ......(((((.....(((......)))...........((((((.((((..((((((.((((((((((((............)))))))))))).)).))))))))))))))))))).. ( -25.70) >DroSim_CAF1 27136 120 - 1 GCCAUCGGAUUUAAUGGUCAAAUUAGACAUUUUAUUAUUUAUUUGUGACAUUGCAUGAAUGGGCUUUGUUUAGAUUUUAAUGAAAACAAAGUUUAAUCAAUGCUGUUUAAAUGGAUCCUU ......(((((.....(((......)))...........((((((.((((..((((((.((((((((((((............)))))))))))).)).))))))))))))))))))).. ( -25.70) >DroEre_CAF1 17450 120 - 1 GCCAUUGGACUUAAUGGUCAAAUUAAACAUUUUAUUAUUUGUUUUUGGCAUUGCUUGAAUAGGCUUUGUUUAGAUUUUAAUGAAAACAAUGUUUAAUCAAUGCUGUUUAAAUGCUUCCUU ((.((((((((....))))..((((((((((((((((...((((..((((..(((......)))..)))).))))..))))))....))))))))))))))))................. ( -23.70) >DroYak_CAF1 28498 120 - 1 GUCAUUAGAUUUAAUGGUCAAAUUAAACAUUUUAUUGUGUAUUUUUGACAUUGCAUGAAUGGGUUUUCUUUAGAUUUUAAUGAAAAGAAAGUUUAAUCAAUGCUGCUUAAAUGAAACCUU .(((((..........((((((....((((......))))...))))))...((((((.((..((((((((............))))))))..)).)).))))......)))))...... ( -22.20) >consensus GCCAUCGGAUUUAAUGGUCAAAUUAGACAUUUUAUUAUUUAUUUUUGACAUUGCAUGAAUGGGCUUUGUUUAGAUUUUAAUGAAAACAAAGUUUAAUCAAUGCUGUUUAAAUGGAUCCUU ......(((((((...((((((.((((.(......).))))..))))))...((((((.((((((((((((............)))))))))))).)).))))........))))))).. (-19.70 = -20.50 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:09 2006