| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,169,878 – 6,169,980 |
| Length | 102 |
| Max. P | 0.521694 |
| Location | 6,169,878 – 6,169,980 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -29.56 |
| Consensus MFE | -23.02 |
| Energy contribution | -22.86 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6169878 102 + 22407834 GCUCACAGUUGCGACGAAAUUGAAAAUAAAUUUUUAAUGAUUUGCUGCUGAGCUCGGUGCUUUGAGCU----------GGCGCUGGAAAUAUUCGCUCUGCUAU------CCAGGGUA (((((..((.((((....((((((((....))))))))...)))).)))))))((((((((.......----------))))))))........((((((....------.)))))). ( -29.70) >DroSec_CAF1 6163 97 + 1 GCUCACAGUUGCGACGAAAUUGAAAAUAAAUUUUUAAUGAUUUGCUGCUGAGCUCGGUGCUUUGAGCU----------GG--CUGGAAAUAUUCGC---------CAGGGCCAGGGUA ((((.((((.((((....((((((((....))))))))...)))).))))(((((((....)))))))----------((--(.(((....)))))---------).))))....... ( -29.20) >DroSim_CAF1 15549 106 + 1 GCUCACAGUUGCGACGAAAUUGAAAAUAAAUUUUUAAUGAUUUGCUGCUGAGCUCGGUGCUUUGAGCU----------GG--CUGGAAAUAUUCGCUCUGCUAUCCAGGGCCAGGGUA ((((.((((.((((....((((((((....))))))))...)))).))))(((((((....)))))))----------..--............((((((.....))))))..)))). ( -30.60) >DroEre_CAF1 5397 85 + 1 GCUCACAGUUGCGACGAAAUUGAAAAUACAUUUUUAAUGAUUUGCUGCUGAGCUCGGUGCUUUGAGCU---------------------------CUCUGGCAU------CCGGGGUA (((((((((.((((....((((((((....))))))))...)))).))))(((.....))).))))).---------------------------((((((...------)))))).. ( -26.10) >DroYak_CAF1 15784 110 + 1 GCUCACAGUUGCGACGAAAUUGAAAAUACAUUUUUAAUGAUUUGCUGCUGAGCUCGGUGCUUUGAGCGCUCGGUGCUUUG--CUGGAAAUAUUCGCUCUGAUAU------CCCGGGCA (((((((((.((((....((((((((....))))))))...)))).))))(((.....))).)))))((((((..(...(--(.(((....)))))...)....------.)))))). ( -32.20) >consensus GCUCACAGUUGCGACGAAAUUGAAAAUAAAUUUUUAAUGAUUUGCUGCUGAGCUCGGUGCUUUGAGCU__________GG__CUGGAAAUAUUCGCUCUGCUAU______CCAGGGUA ((((.((((.((((....((((((((....))))))))...)))).)))).((((((....))))))..............................................)))). (-23.02 = -22.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:48 2006