| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,159,901 – 6,159,993 |
| Length | 92 |
| Max. P | 0.998637 |
| Location | 6,159,901 – 6,159,993 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.63 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -10.22 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.39 |
| SVM decision value | 3.17 |
| SVM RNA-class probability | 0.998637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6159901 92 + 22407834 ---AAAAGCGACAACAAGCAGCCAAAUGGGCAAAA--CAGGCGACACAUUAAAAUCCAUUUUUAAUGUUGAUGUG------AGUCCGC--CACACCGCCC-CCUCU-------------- ---....((........)).(((.....)))....--..((((..(((((((((.....)))))))))...((((------.(....)--)))).)))).-.....-------------- ( -21.70) >DroPse_CAF1 7311 101 + 1 GGGGGAGACGAAGAGAACCAGCGAAAUGGGCAAAAGGCGGGCGACACAUUAAAAUACAUUUUUAAUGUUGAUGUGCCACAGAGUACAUGCCAC---GCCCCCCA---------------- ((((.............(((......)))......(((((((...(((((((((.....)))))))))..((((((......))))))))).)---))))))).---------------- ( -35.70) >DroSim_CAF1 5718 80 + 1 ---AAAAGCGACAACAAGCAGCCAAAUGGGCAAAA--CAGGCGACACAUUAAAAUCCAUUUUUAAUGUUGAUGUG------AGUCCGC--CCA--------------------------- ---....((........)).(((.....)))....--..((((..(((((((((.....))))))))).(((...------.))))))--)..--------------------------- ( -18.70) >DroYak_CAF1 5666 100 + 1 ---AAAAGCGACAACAAGCAGCCAAAUGGGCAAAA--CAGGCGACACAUUAAAAUCCAUUUUUAAUGUUGAUGUG------AGUCCCC--------GCCC-CCAAAACCCGCACCCAAAC ---....(((..........(((.....)))....--..((((..(((((((((.....))))))))).(((...------.)))..)--------))).-........)))........ ( -21.30) >DroPer_CAF1 7370 100 + 1 GGGAGAGACGAAGAGAACCAGCGAAAUGGGCAAAAGGCGGGCGACACAUUAAAAUACAUUUUUAAUGUUGAUGUGCCACAGAGUACAUGCCAC---GCCC-CCA---------------- (((..............(((......)))......(((((((...(((((((((.....)))))))))..((((((......))))))))).)---))))-)).---------------- ( -32.20) >consensus ___AAAAGCGACAACAAGCAGCCAAAUGGGCAAAA__CAGGCGACACAUUAAAAUCCAUUUUUAAUGUUGAUGUG______AGUCCAC__CAC___GCCC_CCA________________ ..........................(((((....((((.((((((..((((((.....))))))))))).).)))).....)))))................................. (-10.22 = -10.72 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:33 2006