Locus 2266

Sequence ID 2L_DroMel_CAF1
Location 6,158,627 – 6,158,744
Length 117
Max. P 0.658011
window3635

overview

Window 5

Location 6,158,627 – 6,158,744
Length 117
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -14.93
Consensus MFE -8.42
Energy contribution -8.87
Covariance contribution 0.45
Combinations/Pair 1.06
Mean z-score -2.22
Structure conservation index 0.56
SVM decision value 0.26
SVM RNA-class probability 0.658011
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6158627 117 + 22407834
CAUUGAGAAGCUGUAAAAAGCUGAGGGAAAAUUCUUAAUUUACAAAAAAGAAACGAAACGAAACGCAACGCAAAAAAGGAAAAACUUCUCUGCGCAAUAAAUGAAACGUAAGGUAAA
.(((((((((((......))))..........)))))))((((.........................((((.(.(((......))).).))))............(....))))). ( -14.20)
>DroPse_CAF1 6047 93 + 1
CAUUGAGAAGCUGUAAAAAGCUGCAGGGAAAUUCUUAAUUUACAAAAA-AAA--------------------AGAAAGGAAAACC---UCUGCGUAAUAAAUGAAACGUAAAAGAAA
((((....((((......))))((((((...(((((..(((.......-.))--------------------)..)))))....)---)))))......)))).............. ( -15.70)
>DroPer_CAF1 6121 94 + 1
CAUUGAGAAGCUGUAAAAAGCUGCAGGGAAAUUCUUAAUUUACAAAAAAAAA--------------------AGAAAGGAAAACC---UCUGCGUAAUAAAUGAAACGUAAAAGAAA
((((....((((......))))((((((...(((((..(((.........))--------------------)..)))))....)---)))))......)))).............. ( -14.90)
>consensus
CAUUGAGAAGCUGUAAAAAGCUGCAGGGAAAUUCUUAAUUUACAAAAAAAAA____________________AGAAAGGAAAACC___UCUGCGUAAUAAAUGAAACGUAAAAGAAA
.((((((((.(((((......))))).....))))))))...................................................(((((..........)))))....... ( -8.42 =  -8.87 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:30 2006